Protein Info for mRNA_3245 in Rhodosporidium toruloides IFO0880

Name: 11613
Annotation: HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 968 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF08550: DUF1752" amino acids 31 to 57 (27 residues), 45.8 bits, see alignment (E = 4.2e-16) PF11702: DUF3295" amino acids 768 to 800 (33 residues), 43.9 bits, see alignment (E = 2.4e-15)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (968 amino acids)

>mRNA_3245 HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702 (Rhodosporidium toruloides IFO0880)
MHTALSTHVLALAPDSLASLGQLDLDSLSELWSLFTRCKDNLQNGRRLENLSWRLWYESG
GCRRDGEPFLRSAQGSPKVDEADWSDPEWEEASDTDSAGGSYSSADEEVAVPPASPPRTR
ASPPSTSTHKPSSPSVSPQSATATSPSRGRTSTAAPARPPLARRGVSREWGGAPVISGGS
LQRMIADLQRLPEIPVPGRARSVDGAALTSNGLNKPPLGSRGSSAPDNLNAASLQASRAA
SPTPAADLTRSSSSASTSARQRSRANSPSISRSASTPTANAPEEAHQPAPPPPPAPPNRR
VPSGLAMSTMPAQSAAARRPAAVSPSPPTPADEPAGVIRMTPSETAMLALSNSRNRSDLS
LSRRAQSTAELAASCKPASFVKGFEPSPPQARQQAQVQVPASVEARPGPGAIAPPPTPAT
NLASLGPSPPKSALKSPSSTSSSRSPRATPAKVPPPPSSAVQAAGPGPSAFTRKTPCPPT
GDRAKKIFFISSPESDEEGSRSSGGRGGGSAGMKVVGSPPSAMKKHASAAETKGKGKEVQ
NGKEQDEEDEWASETETDEEEEEEDDDDSSGWGSEYSTESDIARDSARRGGAGGGAGGFD
STNLFAKQRTASTATLNNGANTGGPGELTRRPPGLLSQLFHPDQFIDDSDRNPSSANLMR
RNHKSMSALPTLGRLQSEKSAGPGRLGANGRSKSFLKGKPEHVELESSSDEGEGYGRRGA
GVAEEAEEGEEEEEDEYEDVDADAEAKAAAAAALARRQRELEEVVAPPQTPRTTRRAMLA
TELSESLRRNLLWERQTRNRIMGGMPRRPTMPGEPLPQRPPSSTNLAAAMQQQGPPSAPA
VPPSQLQQPHQPTVTRAQTDEGGVRAPNPSPATRHSPPLSKRSPPQRPHPPQHHHTQHAP
RHPGTTNLPRRHTTGTGLYLQALNGGAFRRARAADTDSELSQSSDDEDDGRASPADVFGS
SIGGQRVW