Protein Info for mRNA_3251 in Rhodosporidium toruloides IFO0880

Name: 11619
Annotation: K19986 EXOC8, SEC84 exocyst complex component 8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 PF08700: Vps51" amino acids 182 to 267 (86 residues), 31 bits, see alignment E=2.2e-11 PF16528: Exo84_C" amino acids 491 to 691 (201 residues), 201.6 bits, see alignment E=1.3e-63

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (796 amino acids)

>mRNA_3251 K19986 EXOC8, SEC84 exocyst complex component 8 (Rhodosporidium toruloides IFO0880)
MAPTSQGSSSRPNDSSSRDPPSASSSSRAPPSAPSSAPSSRPAGPSSSSGVRFNEPRPET
GRPRAQSNVGAKLLKKRQSVAYSAHPAYEAGSVPAVPSLPKLGPVAGSVERVSTPTGTGG
GASVLPGLAPFAARAPSPATQIGAPVAKERQEQPQAQAQPLSARNEAENQLLATGLDVDQ
LASEGFKPEDFLKQNLPGGRSDAPAQMDDLRRLKGRLEGAMKIAETELQKSVFNNYADFV
LISKEIATLENEMIELKGVLEEWRAVPELLEGGSGDDDLLMGGAAGRRAQRNSIADLATL
YKSQLSALWENVEGSQKFLPYTPGRHIITEAPSFVELNPATYKPKQPVHLVLLNDAMLVS
VKKRRGPGIGGPVRLVAERCFNLSEIVVVDLKDGGDLQNAVKIKRGKETIIFRTDKPEEK
KMLLLAFKKVAEELMNKKRKEMLNEAEARKGDPSSLRGYRDYDGSFSSSNFNPAAALGLV
SGDVPSRDLSWIGDFSDELAVDVSTREFEDAVVLIEKGKSILPKISGDAHASQLFRSKLD
SRTSELVSALLNDLSDHSIRKSGVVRTTSWLLRLGQGERARETFLSARGALVRKRARQIK
FEGDISMYISELAMVCFTLIKNTCEWYMAAFKDNSMASGFVRWASEQVEIYAETFRRQVY
GADQNGKVIEESLEVTKAHGAMLRDVGLDFTFLLDGLLRPQRPTTNTARSSSSSTRLRDD
ALSGSHLRPPKSTASLAPTSAVAMARQSIFLQQGQAGVGNGVARPREVLKAEGEEGRGRP
ASGAGFARDDAVGQAQ