Protein Info for mRNA_3258 in Rhodosporidium toruloides IFO0880

Name: 11626
Annotation: K00791 miaA, TRIT1 tRNA dimethylallyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 PF01715: IPPT" amino acids 80 to 161 (82 residues), 83.8 bits, see alignment E=8.8e-28 amino acids 244 to 414 (171 residues), 105.7 bits, see alignment E=1.7e-34

Best Hits

Predicted SEED Role

"tRNA dimethylallyltransferase (EC 2.5.1.75)" (EC 2.5.1.75)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.5.1.75

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (556 amino acids)

>mRNA_3258 K00791 miaA, TRIT1 tRNA dimethylallyltransferase (Rhodosporidium toruloides IFO0880)
MLGRSSRLGSLSSQSSILHQLDFRRTMAALPKASQKPRLVAVIGTTGVGKTDLGVELAKA
LQRRERGPFEGEVVNHDSMQCYRGLDVITNKATTEEMRGVPHHLMGFLEPGEEWSVNEFL
RDALDKTRELRQRGAVPVAVGGTSYYLQNLVFPDRLAGPLPPSRPATPPAESSTAAHTAE
RRSLTDIAHFPPDLRDSIECLPAELLDLFLAFPALPAISTPDDFPPGFPLQLLPPRLRSP
ATLAPALYSLLQAIDPKSAERWHWRDIRKVQRSLAIVWEGRRWNEVVQEQRETPSEGPRF
KTLIFWLYARKESIHPRLNARVDKMIERGLLSEIDELWQIAHAPGAEPTNYSKGIYQAIG
YKEFNPFLSLQHRDPSRTLEHDPELRRLFDQGVEEMKASTRQYAKRQVQWIKNKLLPAVR
ESDGEVTVVLLDATDLSRWKEDVLEPAIELLNTFLDDKPLPDPATLSSASAEQLAPPEPV
SPSARIKRPCPVCTRDPGQPFLVEERLWDEHVKTRTHRMALRRQNKAEWKGRRREQEASE
AAAVEAESGVASNAER