Protein Info for mRNA_3263 in Rhodosporidium toruloides IFO0880

Name: 11631
Annotation: BLAST Receptor-activated Ca2+-permeable cation channel [Rho...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 761 transmembrane" amino acids 269 to 288 (20 residues), see Phobius details amino acids 324 to 348 (25 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details amino acids 397 to 418 (22 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details amino acids 454 to 478 (25 residues), see Phobius details amino acids 510 to 531 (22 residues), see Phobius details amino acids 542 to 560 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (761 amino acids)

>mRNA_3263 BLAST Receptor-activated Ca2+-permeable cation channel [Rho... (Rhodosporidium toruloides IFO0880)
MVRSNAAGYSQLAGQAPFDPSLDTEGATPVDPLLSSAISLAGSEAVFPLIQRIRAEVEKV
VDTALSFDQLRSPTLNFSVVRPLTIKFSKGDRPAISLIFALIVCRAHFLERSDEDLAFAA
VNTARADLCELLAIKLLSAYGTAPNSYELLHVLTTSFSPFAGVSSDMFHADEDVDLEELK
RLEEFGKEESANALELAIFSKAKRFVKSPLVQQVIKAIDTGEVIYTPESNHALLQDNYKS
KPVVEVYDWRRRPFLDHHRLRVPAIRGRLEFMTFSFLLALFLLTQSTYSLHRINVWEGLF
IAWSIGFALDEWSSVQEVGLSNYYGASFNILDSLFCIDFFAFLGMRIAGLRSHDPEMSQL
AFDTLGLAGCVLLPRLTISLLRGNVILLALSKMIREFSLFMGLAFLTASGFLCTFRILSR
GTWDVGHIAWLMLKIWLGSAFLGFDAAQQFHPFFGPFLMVLFAVLAQTLLLTILISLLSN
TFSAVQANAETEILYQMALRTIERAKADPLTCYVPPFNILALIVLFPLRWLASPRWFHKS
QVYLARLLNLPFLLFLALQTRALHQKRSPLYLATQRTQRAWEKLPRTILGGMVPMWEGSV
EAVVGKVFEREVTEQGRRVASIDEATPTTAEEAEEEQQGKGKNKAQPLSPLKQRRGGAGG
TVGDRLGSLTSPLARIFGPSAITSSASSSAVESQKSLKAAPASTDEKALNDRLTRIEEAL
QILLGEVVKSGQAGDEDDEKKTVPLTSLSGEIEPSYADEEK