Protein Info for mRNA_3279 in Rhodosporidium toruloides IFO0880

Name: 11647
Annotation: HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 527 transmembrane" amino acids 70 to 94 (25 residues), see Phobius details PF03935: SKN1" amino acids 43 to 514 (472 residues), 562.1 bits, see alignment E=5e-173

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (527 amino acids)

>mRNA_3279 HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899 (Rhodosporidium toruloides IFO0880)
MNNAAGVGYGTPRITPHGSESRHSVSRLEGIAGGGAGAALLWEKEPDDFLHDPDPALDKA
MDKTMRKWSFMALLNTLAFCIVVIVLVGLFAGWPIYRYAIDGSWGSYAMHTITNSTGQVP
EIQNLPSMVDKDTPTSVYTRTGYDGEEYELVFSDEFNTDGRTFWPGDDPYWEAVDLHYWA
TTDLEWYDPDAITTKDGNLVITLDQEPWNDLNFRSGMLQSWNKMCFTGGYVEVNLSLPGT
PTAQGFWPGIWTFGNLGRAGYGASVDGLWPYTYDSCDVGTLPNQTWPNGTDPVAAKQDGD
KDYGGELSYLVGQRLSACTCPADADEHPGPSVTKGRGAPEIDILEGQIAPNGKQGSASQS
IQFAPFDPHYLWRNDTTEANPGLKVWDPSITTQNIWKGSISQESASLNTLTDATSYEGAG
YSTYSMEYDPGADGRITWGINSNPTWQLNANAMGPNSETQIGQRLVSEEPMYLCVVQQPE
WGKIKFPGHLRIDYVRVYQKKGQKNVGCDPPDMRELRSLRPSSQVLY