Protein Info for mRNA_3283 in Rhodosporidium toruloides IFO0880

Name: 11651
Annotation: K20224 IPO9, RANBP9 importin-9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1058 PF03810: IBN_N" amino acids 24 to 97 (74 residues), 35.4 bits, see alignment 4.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1058 amino acids)

>mRNA_3283 K20224 IPO9, RANBP9 importin-9 (Rhodosporidium toruloides IFO0880)
MDSNQLLALLQSTLDPNPNVRLQAELHLAQACSEPQTALGLARIATEQQVDIPWRQAASF
ALKKYVKEYWSAFFPTYKGPVATSTEIKTQVREVVFGGLADPVRKIRLACANIVSLIAQP
DWPEDWPTLMDQLLALIRSDSIDAVEGGMRALSDFVSISLTEDQLLPIARDMLPTLMAIL
GAPQTYGPATRARTILIFRQCVMTLFTVKDEHPEAVKAAVGEILPRWLEAFQQLLAPDVA
AELGSSENWEGIAVRIAIFQSLEVILNSFPSTLKALLPTFLSFAAAHLASLQQLYTAAYL
SNSSDFSIPSFASGEEDSDISTDLSTLISTVLDFVAQAVRRKAVRPVLVENHKPTQAFVD
FLRQAVEYAQMTTDDEESWASDPNAFVADEDDEMSSYNVRSAAIDMAIAAVDTLQDPGLS
ALQTAFGQVAQAADGRRSQADGDWWKGYESALAVVGGISEDLIDHVQERAEEGKSPKFAL
EGVFQGVVMTYLTASDVPFLQGRSFVFASQFAEILPQPLAKQYLDAAVQVLDSVAAGVPV
KVSAVRALTNFFRHLKENVEPSQAVVALSKLLPLLPQTSENTLVLVLDAIQSSLKVGGAV
IDQATCSSLIKILLETWFATPEDPLLGSTIADVFASLSASPSPVVQSVLINEALPALAST
MTELRTDPSSIRAASALEITNSIFSRFPSPLPAGAFERVAEILFEILAATDDRDITQTGL
DVVTTVIRKDVDQLLNWRSASGQSGLELVLAQVAKLLQPSESEAGGLFVGDLVIHLVRKA
GAAIGPVLPDLLRAFVTRLATAETAMFTQSLVLPFAYLVHQQLETVLSLLENLTIPGPPP
RPALEVLLSCWCDYAGDFQGYWNQKVSAVGLAHLYAAAASKAALQQVQVKGDMVITEANR
DKIMTRARARANPEQFRPIPFPAKALKLLLHDAQTASANKGGDQGAPEDAVSDDEDDEWA
DEGAEFTAGNEKDLDFLSEMLSGGGLGKYMSSSGDDEEDDVDEQDLQDDPIWNLDLYSHL
TGFFRHAYETDQTSFRQLAETFLNDEEKAILTRLLQSA