Protein Info for mRNA_3294 in Rhodosporidium toruloides IFO0880

Name: 11662
Annotation: K20368 CNIH, ERV14 protein cornichon

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 55 to 81 (27 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details PF03311: Cornichon" amino acids 5 to 126 (122 residues), 176.6 bits, see alignment E=1.1e-56

Best Hits

Swiss-Prot: 56% identical to ERV14_YEAST: ER-derived vesicles protein ERV14 (ERV14) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 80% identity to cnb:CNBC7000)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>mRNA_3294 K20368 CNIH, ERV14 protein cornichon (Rhodosporidium toruloides IFO0880)
MSGEAWLFLFAVILSAALLFTSVFFIIMFSDLECDYLNPIDLCNKLNQFVLPEMIAHAFM
TVLFLLSFQVIAFLLNAPLLAYNVNKVVNRNHMFDATEIFRTLGQHKKESFIKLGFYLVF
FFYALYRMILALVAED