Protein Info for mRNA_3310 in Rhodosporidium toruloides IFO0880

Name: 11678
Annotation: HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 transmembrane" amino acids 343 to 364 (22 residues), see Phobius details PF04082: Fungal_trans" amino acids 29 to 255 (227 residues), 49.2 bits, see alignment E=2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (564 amino acids)

>mRNA_3310 HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906 (Rhodosporidium toruloides IFO0880)
MYGTAAPESSRVWQGACAALAPDAPPRLIDIYLKRSQPANPILDETKFTTSDPASLAEAG
VSYGLLTSLLAHSTCYVHEIRPVHKYLWRQVLLCLEDEYRRPSLYTMQLALVTITARPAI
NVAQTHISLGRLVAAAHLLGLHLDPSKWRLPYSERVLRKRLWWSILQQDKWRALWYGRAS
IIAREDWNVPLPTVEELPPGSSREQQLSMHSFVAMCRLTEIVDTLLSSFLTVRALSSSRS
ATETLRLLEKISLELVALENDLPTELHRLPTADDRPEVTVATGIRSFQLCKLGIDLTLYQ
VSSTSLQPTTAADSLASCRTALTLAQTLVEFLENLAPGDLEMWWAPYCSFIIATAASVLL
RTALSAKDLDATTRTAAGVFFARLVVTLTSSHHASHWDVASLALDKIATLLRSLNGALPE
LVPLLQLFGPPNHANAGPPAPAHPPPPPPVPISPSLTQLSPSLPHPFLPSLPQHAPTPQT
SAPIDQLTSPMSDVDPLWWMHTSVLSLPQHLGALPDLFEGWPSIDGFGQDAFAGGGEAAD
GAVEGDGAMFDLRSFLEGPSSGQL