Protein Info for mRNA_3320 in Rhodosporidium toruloides IFO0880

Name: 11688
Annotation: KOG2493 Na+/Pi symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 transmembrane" amino acids 91 to 109 (19 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details PF01384: PHO4" amino acids 68 to 152 (85 residues), 99.5 bits, see alignment E=1.1e-32

Best Hits

Predicted SEED Role

"solute carrier family 20 (phosphate transporter), member 1; Probable low-affinity inorganic phosphate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>mRNA_3320 KOG2493 Na+/Pi symporter (Rhodosporidium toruloides IFO0880)
MSLHTLSDVDRELIDDSPTLARLVRKGRLAPSRLAQLLAAGRSTRAPKEPEAWECCGSNC
RPCVREIWKIMRVLGNKITLHSPSRGFSMELGSAITVVLASQYVLPVSTTMCITGSTVGV
ALCNGDFRAVNWRAVGWIFLGWVITVPVVGTLAGCLMEENQRKEDDEDEEEKSRIAKVDE
EEGSRGSSSGRETPRVEIELEKLELDEKKETKVTGLKYSNRACDSTTRSVDLGLVPRPQR
LHALPSDASNRR