Protein Info for mRNA_3323 in Rhodosporidium toruloides IFO0880

Name: 11691
Annotation: HMMPfam-RTA1 like protein-PF04479

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 transmembrane" amino acids 35 to 58 (24 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 141 to 165 (25 residues), see Phobius details amino acids 183 to 206 (24 residues), see Phobius details amino acids 225 to 250 (26 residues), see Phobius details amino acids 262 to 280 (19 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details PF04479: RTA1" amino acids 117 to 325 (209 residues), 172.6 bits, see alignment E=4.4e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>mRNA_3323 HMMPfam-RTA1 like protein-PF04479 (Rhodosporidium toruloides IFO0880)
MVSTGQCIALAHGSKEAIRACLDARPQDDQYGYVPSISLGAVFVVVFGISGLAHLGQLVY
ARRYWWMACMVVGNIRESPAHVLAPFVNPAELGERYKPCERTGAGGKTHDSQTDFSFCSL
AVEILGWAGRLWAHYAPLSFSAYVMQICTLIIAPTFMSAALYWAGGLIISHLDPSRSWLS
GNWFKAIFIVADVVSLVIQAIGGGMAGSAVGANPKPDQLRTGSNIMLAGIVIQLAVMVFY
VAYMAVWAFLARRTLKRAGGRIQLMLLALFASSLGIIIRGCYRTPELHEGFKGWIATQQI
WMLFDAIPIAFSTFVLNVIHPHWFLVYPHNLDSVYLSDKPTSSSSPAQTATRNGSDTTVA
QGLQQSIVKGEKVAQQV