Protein Info for mRNA_3339 in Rhodosporidium toruloides IFO0880

Name: 11707
Annotation: KOG2445 Nuclear pore complex component (sc Seh1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 PF00400: WD40" amino acids 15 to 43 (29 residues), 12.9 bits, see alignment (E = 8.6e-06) amino acids 61 to 94 (34 residues), 14.1 bits, see alignment (E = 3.6e-06) amino acids 402 to 435 (34 residues), 13.2 bits, see alignment (E = 7e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>mRNA_3339 KOG2445 Nuclear pore complex component (sc Seh1) (Rhodosporidium toruloides IFO0880)
MAGAAEIRSSTLPSPHFDLLTDIAFSPLASHLATASLDHHVRVQHPSGGANPTWDHATRA
WKAHDGPALCLAWADPEFGTVLASGGVDGVVKVWREDEPPPRAGAGTAANGHHPFLPSPR
PHGTPGHPRTPSAPPAGAHSGWSLTAQLTDCRGTIRSVSFAPAHFGLKLAGVSSDSHLRV
WECLDPTLALREWTLREDVDLAVLGLGPSVGSSAGAAQGGSASASAGQPDGTVPFPSTSS
SVGSAGNPSSSGFPTVSSAASSSSVSVDGRGGFSAVSGAGNARAGGTVESDGGWSVSWFT
EHWWGERLAVTSGTNGVIRLFHFPSGRPWSNFLNLLPSRLALSQPITSSSPFPHGTSTPT
DESHHANPNSSAFSHTSSSSASASDYLLPSGSSASATPTAATHTPPVSSLAFAPPSGRSF
LLLASGSRDGRARVWRITPPPLELANAGGGDADSADGEWSARLEVELDSSATLSGGAGGE
AGKKQGSGLAGGSSPALAVGLGGAMSSCRVAWNVLGTVLSTSGGEDGKVRVWKPTYTGQW
RLLAVLGTEDTPENGQDGQ