Protein Info for mRNA_3340 in Rhodosporidium toruloides IFO0880

Name: 11708
Annotation: K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 742 PF04366: Ysc84" amino acids 86 to 210 (125 residues), 129.3 bits, see alignment E=1.6e-41 PF07653: SH3_2" amino acids 690 to 741 (52 residues), 36.4 bits, see alignment 6.6e-13 PF00018: SH3_1" amino acids 691 to 735 (45 residues), 60.3 bits, see alignment 2.2e-20 PF14604: SH3_9" amino acids 692 to 740 (49 residues), 44.3 bits, see alignment 2.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (742 amino acids)

>mRNA_3340 K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1 (Rhodosporidium toruloides IFO0880)
MPSNPLPMNLPAECRKAQKIFQSFVDPVNGLDHIIPPSVLRRAKGFCFMSVAKAGFVFSA
RAGSGIVIARLEDGTWSAPSAVGTAGGGVGFQVGVEVAEFLIILNSRAAVKSFMSAGSIT
VGGNMSIAAGPLGRNLEGTGALSAKGKVAAMYSYSRSKGLFGGASVEGSIIVERSDANAK
AYGSNVTVTQLLSGQVEPPHWATGLISTVTRLASGLRSLPGGGWGLDSPLDSPYTPSSDI
ENDEEGYFSRTRIEREKARREKEERDDVGLTPREYAENGYAFGSSYAAGGSASRNGIGTP
EKEKSQIRAMLGSVGRSRSGSGASSTKKSSSLANNSYTPPASDDPFAEGPVHTGEARFET
HFSSEFDFAAAQREGLALRPPDSLGMSRGSSTSGVKSPLPATKEADLMDFGGGDDYGKDD
LRSSSPARQGNRSHSGSGTSWFSGGNKPSKPKLTKSRSSTISNGLRERAEAMQWGNEQPG
ERRFGRRDSGDSLDDEYERYREREKEKAGSGRFRASTVAAPSASGPVTAFDRAALSNQTR
NRSASSPLAAPSRTSPFDSTSSLSSAASQNDPIPRSSRNAYSAKPWDSEDESFAASSPSP
ARSPNRSRSGTTASSASARAAAANLDLRQVEADFAGVMDLSKNGGAGEVGSYSNGTRSRS
STIGGAGTPAGRSRSGTGTSTPGVGGMGRVVALYDFPGVETTDLPFKKGDVITILAKDDE
EWWKGRLKLREGMLPRNYVEEL