Protein Info for mRNA_3352 in Rhodosporidium toruloides IFO0880

Name: 11720
Annotation: K06699 PSME4 proteasome activator subunit 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2069 transmembrane" amino acids 1852 to 1866 (15 residues), see Phobius details PF16507: BLM10_mid" amino acids 506 to 1044 (539 residues), 599.6 bits, see alignment E=8.2e-184 PF02985: HEAT" amino acids 1912 to 1940 (29 residues), 18.9 bits, see alignment (E = 2e-07) PF11919: DUF3437" amino acids 1982 to 2069 (88 residues), 100.1 bits, see alignment (E = 8.3e-33)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2069 amino acids)

>mRNA_3352 K06699 PSME4 proteasome activator subunit 4 (Rhodosporidium toruloides IFO0880)
MEDDAIQVDSPEQEPFDEFDDDIDEELILPGTPSPAFERANPFDALGRKSLSPQPKKRRR
LVRPKEKPRREQLDYPESLPYETESLEEMDRKLEEIVRRLIDCVRAKDYDVGFVQWNHRL
ECWMSLKYPMKRDLRAKLAKMYFELSLLPGMDARLVDLAVNMAISLLEPKKRIDISDLQL
PWRQLYAVLEKELFPKQRKTGVTNVSTILLSLVEYSQRFFPPHEIPAMLAAFLPRLNPQL
NSIIASQAFCTHFLPTSHPQYYLPAVFKLWEAFSSEIYDEQWLDFVERLAVLHVDPRVSH
PDIVDELRQMAKDAGEYVEEKTKVEDLLEEHTYSHRKTGIPAYIFGMQDGMTTPGGSPAL
PKWRGIRKDVGIFTEQQFAFIMTKCLRAMGVPVGGGTKAGASGVAASDFATQDSAAHGVA
LTMKRPTEKLGSFAAVIVYSMAADARPSGSTPFGSKAPSRSGSRSNSPTRGAKAPATDGP
NGLLGAVFGDKKERSYLGGSKALDALAKLIQATEGYFHPSNYGKWAPLLGRFLQNVTWEF
FKRWTEEQRSDCRTPSEWRLTPEIRHEFVKTMRTVALLSMFSRDPITISNAQAALKTMAL
LEPDLVIPPLLERVYPSLETLTETHRTTACITALSTVSPPMISRSNYPAGAKNLIPLLEL
CLPGLDVNDPIKTISTAMFVIQSCSQVVIDDLTRPELQLDGEGEYGMSLDTVATASEVPT
IALDEDGNGEGVKLSKREEDEAVRTMTAGFPDWVSNFVRGVMAVFEALPEPGKGNRNGGK
MEDQMIQTLIAACDFVCAQLSPHMFDLALDIVFNEVSNNVRTNSARATSQLVSCFARSDS
KKTLAKFFRLCDMKIRQEMESGAGSTRSTRTNSPIESDATLHWWIGLLTACVTNSGENIL
RYKAEVKSLVQFLVEHAKSETSYTTTARVLSILLMTLTNTWVRDYRSVNADDWRSEEFRK
RSHETWGRLYKVKDVKVEWHISTQEEIDFAVELLRDIVVPIMDKLDALLAEAKADNKLLS
LQWVNDFCRFCNILRASLSGIPSFVLLGPPKDLGVPASDAGDEVPEFIDHLPRCNIGLPL
SDANDPRHAFVASIRTRAGEFLHNAVQTLKVSQQQDTIDCIKMVVATIRTLELDYPTDSN
HHGTVKKSYEFALNVSRVTRNQKEFPRFVWVRRASLYHASRLRINSFYRKRSKLDDLLIH
DLCELSLSVYLQVRKSAQKGLDSMIHYFDGTRTLIYPRLFDALKPGTDHDVMKGALYVLG
SKAPQNFAILDSRLWTPYLLAILGCQHQERPSVQNLVRSVTHDYIIRVGEPSTLKNTVES
ESLQQAADSVEEMISIVEDQDLVKRVAQKVQGRSAQKNAAYDQLIPELLRLADDPNTHWR
YKLTCTRLLRAFIRRDQPQRTTIASYMAQQLVSELPNQRTHSMLALTKILHFVKLRTTCS
GSDECLLLQKTSNPLRRKVELERPLPPDFTAKFIASFTEPLSKDTKLVDKGNTGGWLVWG
DSIDYYEVPPEEGSVFDWDHSSREALDQLRAIVLQPSWWDTFVGHLAMEKSIDYLAADVC
MLIKSIFQVFEDAPCQWVLPAVDDLLADPTNRHKQRAAGELVGGMIRGSKHWSLKKQRML
WEWLGPKLPSIFEKNVTPETQTAWEMCAEYILNARDPRRNKPLVEYITSLKIDEESSEAF
NVSKKQDLVGTAMKALGWHFTPWANGYIEMYLTNIAHPYQEVRGAVADNLRTLCEQLLFP
SYGSVEQFIRDSQRVYDDRAIRSLVAVDDKYEARIDDIGRRLTEWRAERRPASEGTSTYD
KASMTVLTWIWGSISEVRTSSAFPFITKLLPEFFRMQESTDNQELSRMAGRVLLACAALQ
FPQHLVASLMKQFISLLRDSPSWRVRLDVLLPLQVFYYHHLFFLSDGIITELMDQLCDLL
RDPKIEVREAAASTLSGIIRCSQRSAIVSLISRFMSTLRSTKIPKRRDAQGNEVAGYQEA
LVTAHSAVLGVSSLIKAFPYEVPPFIPSILIECMSKHAASPPPLSTTVRTTLADFKRTHQ
DSWETDQKAFTVEQLADLHDLLGHGSYYA