Protein Info for mRNA_3370 in Rhodosporidium toruloides IFO0880

Name: 11738
Annotation: BLAST transmembrane protein, putative [Rhizoctonia solani A...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 53 to 78 (26 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 209 to 231 (23 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>mRNA_3370 BLAST transmembrane protein, putative [Rhizoctonia solani A... (Rhodosporidium toruloides IFO0880)
MDHTRHSADVWPAGQDYWRPIVATGYLLAVSAMSVLFSRRLGSWPSVRRVPLMQLLVVSL
LGGSLIFVFISAIILLGVGSSFSPAACSGGIWLCIILYAGSKVVLYILLLEKLYIVHSHT
ATGRISRMQSWWYRGGCLLLIAWVGIAVAMIVGRVSHIRQSDGACIIGLRLYGSVPELVC
DGLTNIYLTTGFVLPILRHPSPKARRLARISSIAAVAALLTSFTNFGILAGIGGHELSWI
CLGSCGLDVVFNSVIVYIVTTPNRQKDEMTTANSAPHDGGPRSTKQGATSSRMGPFFRGS
TVGHGGTSTIGVHVVEEVQVDEDISPLDPPRRRASVFGSHTVSFQTAEASLDDIIEEDKA
REVDLEKSSPLPSPTSTL