Protein Info for mRNA_3377 in Rhodosporidium toruloides IFO0880

Name: 11745
Annotation: KOG1516 Carboxylesterase and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00135: COesterase" amino acids 32 to 525 (494 residues), 241.1 bits, see alignment E=2.8e-75 PF07859: Abhydrolase_3" amino acids 134 to 250 (117 residues), 31.2 bits, see alignment E=2.1e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (564 amino acids)

>mRNA_3377 KOG1516 Carboxylesterase and related proteins (Rhodosporidium toruloides IFO0880)
MLLLTALAWCGSAALASSIPPSASVRRLPPPPVVDLGYARYQGFFNDTTELYEWRGIRFA
TAARFQAPRTPKKTVAVQNATEYGPTCWQGTVGLKGTLGTLPHISTPGEQSEDCLFVNIQ
APPRALKGGKLPVLVWIHGGGYGIGDSSTTSDLSEFLRLSGSNFVIVRTSYRLGPFGFLA
GEAVKKHGVLNAGLLDQQFALQWVQQHVLKFGGDPGHVAVWGVSAGAGSILNHLIANGGD
TISALGLKKPLFQAAITSSVFLPPQVEYNAPSVEKAYKRLASAVNCTGAASSFDCLAKVD
AAKLAAAAFANAAAAPWAVWTYVPVIDGSFLRDRASVLLKQGRARLNGKFLTAINNADEG
AIWADPTLAADSTTDSTALASQFDRLLAGLFPQLNASERQVVAEYYPFSRAPSIGNTVAR
ISAVIADSTFNCPSYWLAEAFGSSAHKGTFAISPASHGWDTFYYLGDIFGGNRSRSSVES
FDGALAGAILGSFDPNNNPANSHLNPYWPTFDTRREMVFNTTTTDLSSPADPRIVKTSSL
KRFGKDQLERCEFWRGPISKNAGL