Protein Info for mRNA_3382 in Rhodosporidium toruloides IFO0880

Name: 11750
Annotation: HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 756 transmembrane" amino acids 40 to 61 (22 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details PF12400: STIMATE" amino acids 109 to 231 (123 residues), 116.9 bits, see alignment E=4.5e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (756 amino acids)

>mRNA_3382 HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217 (Rhodosporidium toruloides IFO0880)
MDDLAPTLADAIPASNGSSIAAPILEELGNEVDLATCRLLGPFALVIQGIMGAVVILSLV
AKRMREKPRRKWKIWLGDVSKQVVGQAFVHSANIAISDLIALHTSDNPCSLYALNILVDT
TLGVLILYYLLRLSTHLMHTTFNQPAYQTGFYGSPFSLSLWGEQAAIYVACLTAMKVVVL
VLFWAFPVLEDVMSWMLGWVTDDEAQVFIVMLVLPLVMNLFQFLMVDSILKSKDGAGSDA
FDARLEETDEEALRRGFLDSHEDEDDESDHEGAGGRTGSGYSDQSPKIGRGGMQQNGRPG
DASGAGGKGGAERGLLDEEEEAGQGDNGGFFALSMPAQHAYPPAARPPSSSTASTTLPPY
SAHPAPPAHAVRQSVDEEDDWSADWDQASASDSASNAGGARESIPLEPVKPAAVPHPLDA
SPPQPARTGHVRIMSEDVGGADEWGFDADAHEVEDEEANAPGESTPPVPSTPAPRQSPPP
LTTSLSAALDSSAPEAAAHDEADDWGIDEDTHAEPDPPRDVESSPLPPPPAPPLAHSPSP
PPVAASSSPPPPTLAASPPPPSSPPPPPAVPPVQLDETPRQSLDGGDDWGFDADADADGH
TGPEPVSEAHEATPEAKEEEKPERIPQSNGHAGAHEEEEDDWGFDGLGSPPPPAHEVSHG
QSASISSAFEEEDAEPLESAKLPVAGAVEQAADVERRPAPPEAAGDEEDDDWGFDDSPSL
TISSLDPNVKDVVAELEARKKGAIVREAEEEGESLI