Protein Info for mRNA_3397 in Rhodosporidium toruloides IFO0880

Name: 11765
Annotation: K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF00106: adh_short" amino acids 5 to 196 (192 residues), 176.3 bits, see alignment E=7.8e-56 PF08659: KR" amino acids 6 to 158 (153 residues), 45.1 bits, see alignment E=1.6e-15 PF13561: adh_short_C2" amino acids 10 to 246 (237 residues), 197.3 bits, see alignment E=4.5e-62

Best Hits

KEGG orthology group: None (inferred from 36% identity to atu:Atu5438)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>mRNA_3397 K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+) (Rhodosporidium toruloides IFO0880)
MAGRVALITGAGRGIGLSAAKLFLENGYRVFLSDVNLEQARKELSGTDEARIGFLETDVT
KEDQVKAMSQAALKRFGQVDAAIVNAGILSPIVPWLESTPEDLDRMLDINVKGAWLTCKH
AAQAMLDSPHKGKGGSIVFVASVASLYGQPGMSGYCASKWAVRGLSLTAAAEFAPHGIRS
NCIQPGATDTAMFAAFPPDLQSAVTDSVPLKRAAQPTEIAEVMLFLAGEKSSFMNGSTVA
VHGGQTPT