Protein Info for mRNA_3399 in Rhodosporidium toruloides IFO0880

Name: 11767
Annotation: KOG0733 Nuclear AAA ATPase (VCP subfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 881 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00004: AAA" amino acids 627 to 744 (118 residues), 63.4 bits, see alignment E=1.5e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (881 amino acids)

>mRNA_3399 KOG0733 Nuclear AAA ATPase (VCP subfamily) (Rhodosporidium toruloides IFO0880)
MTASVSGKTATAAISSLALATAALALYSSRTPSTTRTRSAAVTAADKSDEKDTETDKDAE
TKQKKDKRRDSEADSKRFEVRKEFFDPSTSRWKEEDEDDSSDSDSDSGSDSDDEGGEGKK
KSSSSKDKKKKRRFLFVAKDRTYPKSPEYAGYEDYIAISVSSHILTSTLRAIHCLQDLDE
IFEDKPDLDARDLFLARDELGKELEKAKKAAEEWSEGDDKAETKADGDVDLGGAPKKKTK
ERLEAEADQLGVLIDYIDSLFKPTATKLARLLQPPSSSASSSTSQPSFHPQITFPLLWAL
FKPRSLAIAEHSESGEKFAFKVVSTAYSLTRDGHVFTVSGTRMIWNGEKYSRVWVDEQIP
KFKSLRRLTSLPVQPLSPTSPLYTDLVSRGKKYVELTEGGGMRFLRYEGVMVQVLGVGMD
RRVVKMRADGRAVVDVKSYRRMNPTRAMNQWWESDDDDDDPFLYGDPSHPLAPSSDDEST
SPQSVSTSDLVLLPPTIYGFSLSLREWGELLVANFSPIAFRDNAWDRLVLDEQTKRLVKG
LVECNEAVREARKRQKKEGAGATTNGQAAKEEKEVEVVSDIVEGKGGGLVRLRRRLALSL
AAFFTRIVLGELAGDVERLFPPSQVITLHGAPGTGKTLTAEAVAETLRVPLYTVGAGSLG
VQADVLEKRLRDVLDIAQYWGAALLIDEADVFLEARSLHDVARNAMVSVFLRLLEHHRGV
LFLTTNRIRSIDPAFLSRFSLAITYPNLDREKRKVIWRQFLELARVGIDSDDSAFPSPAA
TPSRGSPEPNGTPALRFDSHISPSYLSKLASNTSFNGRQIKNAVRTAQALALSQGEKLGQ
KQIEEVVKAVEDFKRDFEEADEAGVYEAPGEGWKDSTNIFN