Protein Info for mRNA_3404 in Rhodosporidium toruloides IFO0880

Name: 11772
Annotation: K13171 SRRM1, SRM160 serine/arginine repetitive matrix protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 PF01480: PWI" amino acids 47 to 118 (72 residues), 99.2 bits, see alignment E=6.8e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (414 amino acids)

>mRNA_3404 K13171 SRRM1, SRM160 serine/arginine repetitive matrix protein 1 (Rhodosporidium toruloides IFO0880)
MGSNFFRGTSLDQDPRFKDKQSALLRKTQFPPSFDTKVDMRKVEMGVMKPWITKKVIELL
GFEDDVLIEYIYSLLEDPENPVVDGKNMQILLTGFLESKTAAFMNHLWDLLLSAQSNPLR
VPTELLEEKKREMREREQQEALRRRQEERMDEVRRSERENRRGPGGGGRGGYGGGGPPGR
FDDRRDEGYRGGGGGGGYGGPPRDAGYGPRASRGGYRDDYGDRRPPLRGRSPSITPPPPR
RRYRSSSRSRTPPPRPPRSSSRSPPFKRRPRSTSRTPPLRSDRRRFRSPSYSRSPSPRRR
SRRSPSPDRSRSRSPPRLGGDRRRSPPPGEGGRRSASPPPRRRRDYDERDERRGGNGGRS
ASPPSTRDAGRPKSRWEEDEEEKPSPGGAGNQESELKEKLLRKKIEASRRSSQQ