Protein Info for mRNA_3405 in Rhodosporidium toruloides IFO0880

Name: 11773
Annotation: K17922 SNX8, MVP1 sorting nexin-8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF00787: PX" amino acids 105 to 197 (93 residues), 51.3 bits, see alignment E=5.6e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (467 amino acids)

>mRNA_3405 K17922 SNX8, MVP1 sorting nexin-8 (Rhodosporidium toruloides IFO0880)
MASYERPRTYSYSSYSNGWGTQDTPPLSTTVPPPLGQTSSPSQLDYSVIDAADGAGASGV
ESNGPSGLGGNILGGREGDEAWQLPAQSRVQLALKGDMEGSLFAKHHVWLVIQPERGTSV
ERRYSDFVYLLDALTKRYPFRLLPSLPPKRIQLQGRYLAADDLFLERRRKGLERALTALT
SHPVIKHDGLLATFLNEQTDLTLYRKAHPFDLSEESHTRTLSPSDLSKLPTDLDSRLALL
RQRITPLVEHWTRITTTLDRLAHRRLNQSKEYEAFRESLEAAVRVEREQGSEAYKPREVE
QTEREVLATARVVGEVGETEGASARRKLETVVEEVKRHREIYVNLRDLFTRQTTLGIDNV
DKLRKRVETNASKLSILRTATPRPLTFDADAERLTSLIDSDQRSIDQLLRRRDFVRWCVW
EEVGWAFRCTSLLSLALKGYAADETAYAKRLAEQWGALAEALGPTQL