Protein Info for mRNA_3407 in Rhodosporidium toruloides IFO0880

Name: 11775
Annotation: KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1255 PF13426: PAS_9" amino acids 449 to 563 (115 residues), 62.5 bits, see alignment E=1.2e-20 amino acids 686 to 762 (77 residues), 19.3 bits, see alignment 3.4e-07 TIGR00229: PAS domain S-box protein" amino acids 461 to 519 (59 residues), 26.5 bits, see alignment 2.9e-10 amino acids 669 to 776 (108 residues), 34.5 bits, see alignment E=9.7e-13 PF00989: PAS" amino acids 670 to 780 (111 residues), 33.8 bits, see alignment E=8.9e-12 PF14598: PAS_11" amino acids 685 to 771 (87 residues), 25.3 bits, see alignment 4.2e-09 PF08447: PAS_3" amino acids 692 to 771 (80 residues), 45 bits, see alignment 3.2e-15 PF00320: GATA" amino acids 1084 to 1117 (34 residues), 48 bits, see alignment (E = 2.2e-16)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1255 amino acids)

>mRNA_3407 KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain (Rhodosporidium toruloides IFO0880)
MQPYQPYQYGSLYDDGQRQQQQQQQQHQQQQYQQQRQQSYPPPQPPPPSHDSPHPASPSF
YNPGPSSSMSYYDVSPALAPAYGSTSIDPIDADYGPQALSAASPSTTTDFDHAMADAASV
AVDNEVDNMLQSSGLSGFAEASGSGGRMMFGADPPQAEVVPRSYSYTAPGGGGGGNGTVL
TAYRNGDGSGGGVMWNGPAQNGSNAVAEAFRQQQQLQQQQQAGMSAAMDAFARLRAGSIS
ITPSAGGHQQQQQQQPQQQHSQQQHQSSPLAANAMSKATRARLNAATRTVSSPVLSIAPG
AMMGSSRQPFAQQAQSPRPDASPSAGEPYPSYDPANPIYDLYGSSYGAVHMPSPQQQQQH
QPPSRRQSMQQPDPAPFSHNPTAPSDPYDPKALGLPMPPPRTNNGTTTANSYQNIYSTSG
FDLIGILARVVNRKNPTIEIGAVDMSCSFVVVDAKKFDQPIVYASETFGKLTGYSTEEIV
GRNCRFLQAPGDQQVVQGEKRRYTDGNAAHHLRQHIVRGEETQVSLINYHKNGKPFINLV
TCIPVSYDDSGDISFFVGFQVDLVDQPAAILDKMQNGSYVVNYSVVHATIARNPSVISFD
TAIALEQLEDTAHSAAQQAQSHAAQAVAKAGAAVQQAREQLRTDDPSELIDTVATSGVAG
LANETLRRQFMRLLVEQSDDLIHVLSLKGALLYVSDASKHLLEYEPGELLGKTLSSFCHP
SDIVSVQRELKDAGVSAHPSVNLVFRIRRKNSGYVWFEAKGRLHLEPGKGRKCVILTGRP
REVYKMSWRDLELAGGVGKGDYEFWAKICVDGIFLAATSSAEKVLGVSNVTADIVGRSIS
DLSRRTMNDSERFMSALLKATKGEPTKVQHSITPVPGRAPIEVVTRFYPARSETDPVIVT
SPILTPVGGKQVAVIAQISLASDEGDRARRAAAAMSSASSSINSGESVLSGSKRSGSSGG
RTVDTAATSAAAAATTASASSAGVAVCAPVVAAAIPGTGPPGLTSFSAVPSTFKSLATSS
SVSDNVFDELNVTRGTSWQFELHQMRLTNKKLREEREALETIKKKKAMHAKAPPPKAGTG
QRSCANCGRTSSAEWRSGPTGPKTLCNACGLRWSKARSQAVAAEKKRKEEEEAKAAEAAG
HSSSDPQSRSNSRDSTASGSGASTNPTTVMPSPMASYQHQLAGMSPHSPGCAPPSNNVSP
LSMYPNMSIAPSHSRPQLVHQASSGLQHAFATNPHSMMGVNPSSHLGHLAQHGPT