Protein Info for mRNA_3409 in Rhodosporidium toruloides IFO0880

Name: 11777
Annotation: K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1536 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 227 to 245 (19 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 333 to 355 (23 residues), see Phobius details amino acids 407 to 426 (20 residues), see Phobius details amino acids 432 to 450 (19 residues), see Phobius details amino acids 509 to 533 (25 residues), see Phobius details amino acids 548 to 566 (19 residues), see Phobius details amino acids 964 to 987 (24 residues), see Phobius details amino acids 1007 to 1029 (23 residues), see Phobius details amino acids 1078 to 1104 (27 residues), see Phobius details amino acids 1110 to 1131 (22 residues), see Phobius details amino acids 1189 to 1212 (24 residues), see Phobius details amino acids 1224 to 1246 (23 residues), see Phobius details PF00664: ABC_membrane" amino acids 270 to 560 (291 residues), 221.3 bits, see alignment E=4.2e-69 amino acids 965 to 1236 (272 residues), 164.4 bits, see alignment E=9e-52 PF00005: ABC_tran" amino acids 629 to 785 (157 residues), 104.3 bits, see alignment E=1.6e-33 amino acids 1307 to 1460 (154 residues), 106.9 bits, see alignment E=2.5e-34

Best Hits

Predicted SEED Role

"Lipid A export ATP-binding/permease protein MsbA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1536 amino acids)

>mRNA_3409 K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1 (Rhodosporidium toruloides IFO0880)
MGERRGLGCRVRSRPSPFPRGLFLLLLSLHARTKPWQTQATRQRAPHPQQQPSQAKSQPQ
TPSQLLPHILPPPNTRLTSRRAHRIRRDRRARRTMDYPRPQTSNRRPSHRNRTIRRRVLP
PRRPTSSALRLRPAREGSATLVRRRRREAASRSTRRSRPHSSWRRSATRGQRKARSAAMA
RRRRARRTRRARRSRSTSVARSRSRSTTPNSRTSRPSTARSSQSRCGSFLLFPCLVANTC
THSQVLKRPPATFGELFRFTTKFELLLNGIGLVCAILAGVAQPAMTILFGNLTSALTDFG
SLLLNRPSDPAVFAQQYAAARSHLFHEVDKDVLVLVYIGIGSFVATWIYMATWIYTGEKA
TRRIREKYLQAVLRQNIAFFDRMGPGEVTTRIETDTHLIQEGISDKIAISVFFIAIFISG
FVIAIIRNWRLALVISTIIPCIAIAGGMMNKYMSAYKQNQLEATAQGATLAEEVLSSIRS
VHAFGNQKRLAAMYDEPNQKTLREGLKSALFNGGGLAVFFFIIYSSYGLAFYYGTTLIIQ
GRASSGDVVATFFSILIGAFSLAQLAPNLQALSFARGAATEIFATIDRVPSIDSYSEAGL
KPEKVDGLIELEGIDFFYPSRPAVQVLYNFNGVFPPGKTTALVGGSGSGKSTCVGLIERF
YDPVAGTVKLDGVSIKELNLKWLRNQIGLVSQEPVLFATTIAGNVEHGLIGSRFEHESPE
QRRQRVIDACRLANADGFISQLPNGYETQIGERGMLLSGGQKQRIAIARAIVSDPKILLL
DEATSALDTQSEGIVQDALDRASLGRTTISIAHRLSTIKGADQIIVLTAGHILESALSTE
TERAHDILLKKPDGAYTKLVNAQRLREQKEAEAAPLDSSSVDSTDEQTALPGELTRAQID
EMARNEKPQFENLKRTGTGRSLASQAIERQQLDLEANHQRDRHLGLPYLCYRMFKLNRDQ
WKQYIVAFISAIACGCVYPVFGIVFGGTIGVFQETDPAKLRSGGDRHALYCFIIALVSTL
AIFLQAWLYGSTAERLSAKIRLQTFSAELRQDIAYFDRDENSTGKLTNQISDLATKIYGL
FGVTQGVIIQSVFTLISGAIIGLIYSWRVALVGIACMPLTLSAGIVRLKVVVLKDQKNKK
SHEGSAQMACEAAASIRTVASLTREADCTAIYSRQLEEPMRVSNRIAIYSNALYSLSQAL
SFFVIGLIFWFGSHQLVDNGLSTSAFFVAQISVVFASIQAGNVFSFVPDMSSARGAAAEF
VKLADSVPDIDAEDPSGEQFDLASAEGHIRFEKVHFRYPTRLKVPVLRGLDFEVLPGQFV
AFCGASGCGKSTTTQLLLRFYDTLAGRVIVDGKDISTLNVQSYRRAIALVSQEPTLYAGT
IKHNVALGAFVPPEQVSQEEIEAACKSANIHDFIMGLPDAYNTEVGGKGAQLSGGQKQRI
AIARALIRNPKILLLDEATSALDSESEKVVQRALDEAAKNRTTIAIAHRLSTIQNADCIF
VLKDGVIAERGTHDELLSRRGLYYELVAQQSLEKAH