Protein Info for mRNA_3419 in Rhodosporidium toruloides IFO0880

Name: 11787
Annotation: K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 983 PF00233: PDEase_I" amino acids 426 to 704 (279 residues), 210.4 bits, see alignment E=1.8e-66

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (983 amino acids)

>mRNA_3419 K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase (Rhodosporidium toruloides IFO0880)
MAFFNNPFASAGGPPIVPSTTINPTSTSFPLESSVRRSSLVRASTSGSGDVSVPLSPAST
TSGGSGGGGTSPGLSGTASGSLGGGGGITFISPFASSQKRPSIAPSTVTVVPGRRPSTPG
SPAAHRPSSARSSSQPRSASGGESPKLSASRRASLQGTPSPLRSPAAGAAHAPPFFSGFM
ASATSSNGLLRVAPEFPRRRSVDVGVLGVGTRRVHGMTAMSRRMRDAVGPDAGDKATGVV
GAGAKGAKDRLLGRHLASLLAHSLSLCAEPKNAEGASAGIPEPTTEVLPHATLEAIPASP
ISSPTPSRNTSVSAESVTYNNAGTIPPGFPHDAPTTSASNEPSQRLESRPASSPFPALSE
AKRFKLIANLQSWSFNAMSYSPDELLACVGIIFESVRNMEGVDFDLERFKALLLSIRSAY
HSRNGYHNFNHAADVTQACYSFLVRMGLAPPLYLLCEDDYDANLGEGRRKWRRNRAVEEG
GMGELLRPMDVFALMVACIGHDVGHPGLTNAYMVNARAPVAQIYNDKSILENFHTVTLIH
MLRRHNFEYLLGGDFGHLGERATPFRKILEASILATDMSRHFAFVTELTEMGKRLSANGR
RASGDLEADKLLLCAGLIKCADISNPTRPHRISRVWAQALQEEWAVQASIEANFGLPITV
MTQDPSNVKAQAKGQVGFIDLFCKPLFGAMSTVVDEFADFVEKLRDGRAAWEAISLQTDE
AFAQPIARDFTLPAAPPLRRKKTSESSGSAPASASGSLPPSPRSATPASQASDPTSTPVA
NPSPALGAPATASKPVPMSIDTRRIGRPTPLRTAIQRPLHVRQSSSTSSTSVTTSPLSPL
FANSAGSPSSAATAFSSFSQLSSISIVNGPQTADSVSLYASPKTGGYDPSSTGILSSSVE
KAQRSVCGGACLVGTAMCEVCAAAQRRGSLGNALEERDRLEEEEDDEELDLLEGEEDSDV
WPPHPFQPTRHAIQAAQLEQAAA