Protein Info for mRNA_3427 in Rhodosporidium toruloides IFO0880

Name: 11795
Annotation: HMMPfam-Domain of unknown function (DUF1996)-PF09362

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF09362: DUF1996" amino acids 37 to 263 (227 residues), 254.3 bits, see alignment E=8.1e-80

Best Hits

KEGG orthology group: None (inferred from 42% identity to mgr:MGG_10514)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>mRNA_3427 HMMPfam-Domain of unknown function (DUF1996)-PF09362 (Rhodosporidium toruloides IFO0880)
MRYTLFAGFLLLARCCDAFWRLPCQGDGAALVYQRADPITNPGLASVSGGSNFNLDVDFQ
TLRQSKCTSCMVKQDMSNYWTPTLYFHWANGSFTSVEQVGLLVYYLPRNNKADKGKVQAF
PDGLRMLAGNPYLRSYNASSDMAKAIGANCLGGKADPTRNPWLPPENCPNGLRLEVMFPS
CWDGKNVDSASHQSHVAYPAGGESGPCPDTHLVRIVTLFYEIMWSVDPWKDKWNQAMNKT
QPFVLSMGDPTGYGRHGDFMNGWDRDVLQKAVDTCTADSGVIEECPVFELYDYKDGKNRC
WQTPSVNEQVLGTLPALPGWCVHSLRLSHI