Protein Info for mRNA_3433 in Rhodosporidium toruloides IFO0880

Name: 11801
Annotation: HMMPfam-Rtr1/RPAP2 family-PF04181,HMMPfam-VMA21-like domain-PF09446,ProSiteProfiles-RTR1-type zinc finger.-PS51479

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 262 to 277 (16 residues), see Phobius details PF09446: VMA21" amino acids 32 to 80 (49 residues), 40.4 bits, see alignment 2.6e-14 PF04181: RPAP2_Rtr1" amino acids 163 to 246 (84 residues), 47.7 bits, see alignment E=1.6e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>mRNA_3433 HMMPfam-Rtr1/RPAP2 family-PF04181,HMMPfam-VMA21-like domain-PF09446,ProSiteProfiles-RTR1-type zinc finger.-PS51479 (Rhodosporidium toruloides IFO0880)
MVFRRGVPLPRVPEHLKQAEAVPEGHADLSSVVTKLAIFTLAMVLLPIGTYYLTRDFLFG
PQNLTYPAIAAVTVANLILTSPSMPSLPPPRPPNPSSFRVATSSHPRSHQTDSADLSSFH
SSFLSRALSSAGPSSLALRLSWIERLSNPEGVGLEELREAAAVLDRASWEDLLEERWTEG
RCPYPTCSRPAGEPYRAPEERSRDEKRLRVRMRANGLYEAPRRDEGKGAYCSEICRARSE
CPSTSLARFRRTRLRATTTTRASFFFLLLETVPLTSFPRLSRSPIRLVLRHHILQRLIPP
PVLHNPTKQNSPLFPLSPSDRSSTDSVPWRSTDG