Protein Info for mRNA_3437 in Rhodosporidium toruloides IFO0880

Name: 11805
Annotation: K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 PF01399: PCI" amino acids 366 to 464 (99 residues), 74.5 bits, see alignment E=9.1e-25 PF08375: Rpn3_C" amino acids 472 to 527 (56 residues), 76.5 bits, see alignment 1.8e-25

Best Hits

Predicted SEED Role

"proteasome regulatory subunit Rpn3" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>mRNA_3437 K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3 (Rhodosporidium toruloides IFO0880)
MASTEPTSAAKTDSNEPATPPASDYTILAANVTHNLSLLHQAVSLLEPRFTTRALRSLPE
VRKKFGKDGEVLAEVIRSGHVFKDGSDRKAQLIKALGDPPAPPKDAPASSTSDGDASMEV
DSAEKQGETDKKDGKEGSALKEVAKKVKKAGQHEELKEVASELPEGDAFVCLLVVISLLD
QKKYEEGKALATNCLEFFGQLNRRTLDQLLSKFFFYWVRLHEVSGDDTGALRPTLLAAHR
TASLRHDTDLQATLLPLLLRNYLEHGLYEQADKLVSKTQFPEGSAQNSQLARWYYYLGRI
RAIQLNYTAAHTSLEQAIRRAPSDLRAAPGFFQHAYKLHVLVTLLMGDIPERKIFREVVL
KKALRPYLEITQAVRVGDIQAFNAALSQHTAVFTADRTLSLVHRLRHNVIKTALRTISLA
YSRISLRDISTKLALDSEEDAEYIVAKAIRDGVVVAKVDHEKGEMTSRETGDVYSTGEPM
REFDRRIGFLLDLYNQSVKSMRYPMNAHSKELASAKEARERERELVRRFPRIFALYLLIS
RSQAKEIEEGDSDADLDGPGDMDSF