Protein Info for mRNA_3438 in Rhodosporidium toruloides IFO0880

Name: 11806
Annotation: KOG1162 Predicted small molecule transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 995 transmembrane" amino acids 486 to 503 (18 residues), see Phobius details PF03105: SPX" amino acids 1 to 432 (432 residues), 175 bits, see alignment E=2.5e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (995 amino acids)

>mRNA_3438 KOG1162 Predicted small molecule transporter (Rhodosporidium toruloides IFO0880)
MKFGRYLAAHQIDEWKRAYIDYRKLKKQIGRAEEELFDIDSGGIGETGEAGEDVRETAQD
DERRAGSARRLQRQTSSSAAPEAVEEDGVAEAANGRDLERGSSENDDDDEPTSPSSHNKR
SQNSSSRAVKSRQSQPPASTPPHSPGLSSSSHEHVSDTTQNTDRPLVTRKESSKSGISLK
QQTSEQPLTQRHTRRFSTSKPAQGPRGQDGRWRKGLKSNMELSEVYERIPPQCRRFFTLL
DRELERVTSFYADRETEATKRFEQLDAQWKELANHKKEFQAFRERELHPPQFVTSILPKR
GHLPNVPGSHLVRRTLAHRRRQLADAAHMGNGDQPERRLSGESEDSHERGGDEHAGDADD
EGTAREQVFKQVRPEDYTNARSKLKLATFEYYRYLGMLKSYRVLNRTGFAKALKKYEKAT
QIPCAVKYSEKVEKANFVASTKLDDLIRETENAFANVFERGDRKKALERLRDFGEKKRHH
FSTWRAGMFMGAGLPLMIEGLVLSVDSPRDSVLASPSAAFRRLLPARLLLARLLPQPRNL
ELRSHQLRSHLRARRPDEARLPSVPRAPGRPLLHPLPLLLGGLEQLLAGPDRALRLPSRL
DCLYASHHAQPLPHPLPRRSMVAPPVLLPHDHLRPRRSRVPRLLPRRRVQQHLLLGLQPR
LPLLHVQPRVGAECPTDVLDQQDVDLGRSRKSAAVLASRTEHPPLRRLGRHVPAPPQRRQ
VLDDDPVLLLLLLLAHPGSSTFRRAPHLPFSHTSSPSPKLVAASCGTPFVSKPSTSATAT
VSASRGKSACRTSRHHHRKRAAASLTTALPTRTSTSRTASASSSSSTPSTPASPRTSSPS
SMRSRRRLSSRSVVASTTPNGRLARLWRRSAATTLRRSARTSDVWPLASARDEAHSVLTR
RAAAPRSPTTMTRERKANNDASMGARPVRAPALDPAATWKRRTPRRELTRRGWTRRSARR
TGRSMTHGRCGRTKATTIRRTTTSLSRRVCGMSSR