Protein Info for mRNA_3439 in Rhodosporidium toruloides IFO0880

Name: 11807
Annotation: KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1248 PF00412: LIM" amino acids 6 to 54 (49 residues), 32.2 bits, see alignment (E = 1e-11) amino acids 59 to 114 (56 residues), 44.1 bits, see alignment (E = 2e-15) amino acids 459 to 500 (42 residues), 24.4 bits, see alignment (E = 2.8e-09) PF00620: RhoGAP" amino acids 902 to 1037 (136 residues), 121.4 bits, see alignment E=3.1e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1248 amino acids)

>mRNA_3439 KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins (Rhodosporidium toruloides IFO0880)
MTGQFVRALGTVYHLDCFRCMDCGKMVAAKFFPIDASDGSGRQVPLCETDYFRRLNLLCA
KCGQALRGSYITALDMKFHVEHFTCEVCPTVFGPHDSYYEHDGSVYCHFHYSTRFAVKCT
GCRTAILKQFVEINRNSVDEHWHPECYMIHKFWNIKLAPTPKAVEALPPPDSSDPSSAPV
PDSSTSAPPSPEYLAIEASETPGSLKGRQKHMEEQVYRIWTILSAFEESSAACISEMLRH
VSSGYYMEGVGMAEKFVLHVETLFAAIDDLNEAFRRAGAKELQHVREARMLCKKVVNFFM
LLSHTHETGARKMSVTQDLLSLVTGLAHYLKILIRIALAGSLKLEREHGNVQAIALFLGR
LDRLARDPEANKISATMLALARKGGAWNASSARAGLGPATSTAPNRKDSDQSAASASGDE
ANGVSHVAPVLARPTYGYKSLARAIGTLVGQGEATTDLCEGCRLTIEEECVRRGTSIRWH
LPCLRCAHCQRLATKDDSTASAEELPLADFVWVPAGGEGGQGATVCKECARRERGGSLEG
TVDGFAHVTRLEQYAFLLCVALNKLYGRLKQRGVVPGTPPDGEETRSLSDAYRDSSDIKR
MKSVQLDRKLSATTARVPQRSTVIQSPSGRTAQSDATDPTFQLFQAKPPVPSRKDQPLVD
PVRGTTIPRSQVREVVPTSSGHATPTPSNAVTPTPSPGLAGPAPLPPSATLPAAVQRPHF
NRATTAVRIVDDPPPRTEDVPSGGVREPEGLGGTSEPTKDEEGLTLADLPKALEAEQKRA
AAPDKQARRSPLSDPREQSQPYASPANNGPKLLSELSALEYFIVKHVSAVLLSSETSALC
DVAPLDDLLDIIDARKNTFWGKLFKAGGEKKKVPKKGVFGIPLEVLVERNGADSMHGAGP
DMSIEGIFRKNGNIRRLKDLTEALDRDASSVNLSDENPVQLAALLKKFLRDLPDPLMTFK
LFHLFIAAQRVDDPEARKKALHYCCCMMPKAHRDTMEVIFVFLKWVASFSHVDEETGSKM
DLQNLATVISPNILYAKGKDPARDESFSAARVVHDLLELQDEFWEVPAECLSILNDQELF
SNPSQLTSKEILARAENHIRLNGRATHWKVSRGEASPPRRPGLQEAWSAPAIPGGGGGSR
PISTYASPSPFRSPERPTSYSNQPSSGGGGGPNAIGAPQPWSSGSSPWPPAPPPEDRFEA
PYRRGTEATGSSSSLHRQAHSESGQPSFPSHPMPHTSSSHPYQRAAGR