Protein Info for mRNA_3449 in Rhodosporidium toruloides IFO0880

Name: 11817
Annotation: HMMPfam-Integral peroxisomal membrane peroxin-PF06398

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 654 transmembrane" amino acids 53 to 77 (25 residues), see Phobius details amino acids 85 to 118 (34 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details amino acids 237 to 257 (21 residues), see Phobius details PF06398: Pex24p" amino acids 44 to 437 (394 residues), 101.4 bits, see alignment E=2.8e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (654 amino acids)

>mRNA_3449 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 (Rhodosporidium toruloides IFO0880)
MKALPSLAGNTPSAASSPTRPSTLANPLVSSTSPPPSEEPSPTDLLLATPPTLLKLFALS
APVIHAGATFVQLVTWTHPSFFGSLLVLLGWWAVCLFGYWVALYGVNAAVLVFILRGYLS
SARRAKTSASSSIRHRSRSATLSPAAYAQLINSAHVLAEQVQSFRTGVIYPLSLHFSFTP
LRPSTPAPAYATAWLCLTSYPFYLALTYFVPLKYIFLVLGSVAILWQAPFFTTLRTLLWR
SAFVRWTFRLFLGVLRGGKGVRREVRRTKSGIGIPGLIGSQAAQLSGRGGTVKGSAVVEE
KSVKKPRSSSVVSSAKSSPPLASATAGSAPVVAPEKVAEETALQQETAVQGDEEDIQVQF
TVFENQRWWVGLDWTHALLPGERASWTDPDNNPANPPSSFVLPAPSVAYIPSPTKSDPNS
RLKKTTEWRWLDPEWHVLRSAVASVSLPAAGAGGSPVPPTSPESSAVAATPPSPTLSRIL
GSASSAVACATSSSAPTSSPGAIASPSFTTPTAAGLTYTDSTLFASWSVDDEGWQYGDNH
FEKMGPRGGLGRYTRRRAWVRRAGLVERTERVSGPAPVANGVSSPATSGEKKKDVTGSGE
GEKKERRQISTRRASGSRTASASGVARSESTRRRKVVPPAGEKARGEGVAAGGG