Protein Info for mRNA_3455 in Rhodosporidium toruloides IFO0880

Name: 11823
Annotation: K03424 tatD TatD DNase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 PF01026: TatD_DNase" amino acids 29 to 311 (283 residues), 175.4 bits, see alignment E=7.6e-56

Best Hits

KEGG orthology group: K03424, TatD DNase family protein [EC: 3.1.21.-] (inferred from 45% identity to aag:AaeL_AAEL015062)

Predicted SEED Role

"Deoxyribonuclease TatD" in subsystem Twin-arginine translocation system or YcfH

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>mRNA_3455 K03424 tatD TatD DNase family protein (Rhodosporidium toruloides IFO0880)
MAVPRLIDIGSNLGDPVFRGSYHGKQSHPNDFADILSRARRAGVGIQMLTGDCLEGSKEV
LALAQQHRGLYATIGCHPCRATEMDKFPGGPEAYIAELDKLIVENKGKRAVAVGECGLDY
DRLFLAPKESQLRNFPPQLELASKHDLPLFLHSRNCHADFVSALKAHGKPLRGVVHSHTG
TAEEALELIEMGFFIGINGCSLKTEENLEVVKRIPLESLMVESDCPWCAIRPSSAAYKHL
ADLVDKSEFAHLKERYIPADVKKEKWTQGKAVKGRNEPCCTGQVAWVVSQLKGISLEEVA
EMTRRNTLALFGPAGMSEEDGVWGDEEEKGDGRAPE