Protein Info for mRNA_3480 in Rhodosporidium toruloides IFO0880

Name: 11848
Annotation: K02180 BUB3 cell cycle arrest protein BUB3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF00400: WD40" amino acids 14 to 42 (29 residues), 15.3 bits, see alignment (E = 1.5e-06) amino acids 96 to 123 (28 residues), 17.5 bits, see alignment (E = 3.1e-07)

Best Hits

KEGG orthology group: K02180, cell cycle arrest protein BUB3 (inferred from 46% identity to ncr:NCU09744)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>mRNA_3480 K02180 BUB3 cell cycle arrest protein BUB3 (Rhodosporidium toruloides IFO0880)
MAQTSDLQLPAFVDSVSSLAFHPSNPNLLLVGSWDRTVYLHDLRNPTNPRKLAIRGAVLD
VAWAGRSETLAYVGGLGKEVRSLNFDSNESQLICKHDDAVRCVEWSQELNAVVSGSWDQT
LRITRIDPSTSQPSPSPLILKLPHKVYALSVSKTKVVCAMGGRSVHIWDIAALKKALDEG
KSGEEVEPWQMRESSLKFMTRAVKIMPNEQGYVTTSIEGRVAVEFFDPASDVQAKKYAFK
CHRQVIEGVDTVYPVQGLAFNSVWGTFATGGGDSTVSLWDPAAKKRLRQFPKYPAPISAL
EFNADGTQLAVAFSQDDEGAGSGSGGAGGGNGVWIRACGDECKPKSKA