Protein Info for mRNA_3490 in Rhodosporidium toruloides IFO0880

Name: 11858
Annotation: K05236 COPA, RET1 coatomer subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1241 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF00400: WD40" amino acids 48 to 81 (34 residues), 26.5 bits, see alignment (E = 1.8e-09) amino acids 86 to 123 (38 residues), 36.5 bits, see alignment (E = 1.3e-12) amino acids 128 to 165 (38 residues), 33.8 bits, see alignment (E = 8.7e-12) amino acids 205 to 238 (34 residues), 21.1 bits, see alignment (E = 8.8e-08) amino acids 248 to 283 (36 residues), 24.5 bits, see alignment (E = 7.8e-09) PF04053: Coatomer_WDAD" amino acids 346 to 775 (430 residues), 476.4 bits, see alignment E=2.1e-146 PF06957: COPI_C" amino acids 830 to 1239 (410 residues), 462 bits, see alignment E=3.3e-142

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1241 amino acids)

>mRNA_3490 K05236 COPA, RET1 coatomer subunit alpha (Rhodosporidium toruloides IFO0880)
MQMLTKFESRSNRVKGISFHPRLTLLAASLHSGSIQLWNFQMGVLVDRFEEHDGPVRGID
FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLHGHLDYVRTVFFHPEQPWIISASDDQTIR
IWNWQSRTCIAILTGHNHYIMCAQFHPKEDYVVSASMDQTVRVWDISGLRKKSTTAAPLS
FEEQIQRANAGQADLFGNTDAVVKYVLEGHDRGVNWASFHPTLPLIVSCGDDRQIKLWRM
SETKAWEVDTCRGHYNNVSQVLFHPKHELIISDSEDKTIRVWDMTKRTAVQTFRRENDRF
WVLAAHPKLNLFAAGHDSGLIVFKLDRERPAFSMHANMLFYVRDKHVRAHDLSTGQDTSV
VSVRRLGTQYQQPRTLSYNPAEKAVIVTSASDNGLYELVRLPKDLASGEVRDSASEGKRG
TGQSALFVARNRLAVLDRQAQTIEIRDLENTITKTIKCPVQVQDIFFGGTASLLLSTATS
VVLYDIQQQKVISEIATPLVKYVVWSNDNSMVALLSKHTIVLANKTLGNPNLIHETIRIK
SGAWDDAGVFLYTTLNHIKYALPNGDNGIIKTLEQPVYLVRVKAKTVHVLTRDARVEAVQ
IDPTEYRFKLALVRKNYDEVLHIIKTSNLVGQSIIAYLQKKGFPEIALHFVQDKTTRFDL
AIECGNLDVALEMAKSLDREDTWSRLGQQALKQGNHKIVEIAYQRTKNFDRLSFLYLITG
NEDKLGKMSKIAEMRGDPMSRFHNALYTGNVEGRVNVLAEAGMTPLAYVTAKTNGLDDLA
QQILESAGLTAEEVEPVLPPSQHQRSTLRPPRPVNPTADSNWPSVGVTESFFDRALAAAA
NGEPTGLDAYDEEDLLEQAVAGEEGGLAWAAEDRLDKHEAQEAEDAWDLAGDEEAHGDGA
DGEVFGAGDDGAADGSAGAGASPEDELSGPVQPGIPESELWVRNSPLAADHVAAGSFETA
MGLLNRQVGIVNFAPLKPLFLSVYGSSRLYLPAAPSLPPLEIPLRRNADRNEPRSVLPVA
TLSLQSITQNELRAAYAAFQRAKFVEAADIFRSILQSLLLVVTETAAQAAELQELVIVCR
EYLIGLSLEIERRRIAAQPEMLKRQLELAAYFTHCRLQPAHLQLALRLAMTTFSKAKNYP
TAASFAQKLLDLNPAAAVQQQANTVISTANKYPRDAIEIDYDLHQPFDVCPASLTPIYAN
APAVEDPFTGARYHPQFAGQVCRVSGVSEIGKSAAGLRSTV