Protein Info for mRNA_3507 in Rhodosporidium toruloides IFO0880

Name: 11875
Annotation: K12251 aguB N-carbamoylputrescine amidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF00795: CN_hydrolase" amino acids 6 to 306 (301 residues), 126.9 bits, see alignment E=4.8e-41

Best Hits

KEGG orthology group: None (inferred from 49% identity to ani:AN7920.2)

Predicted SEED Role

"N-carbamoyl-D-amino acid hydrolase (EC 3.5.1.77), putative" (EC 3.5.1.77)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.1.77

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>mRNA_3507 K12251 aguB N-carbamoylputrescine amidase (Rhodosporidium toruloides IFO0880)
MVRPLRVAAAQVGRIDRGTPRAAVISRLNALLDQAAERGVKLAVFPETTFSTFFPRYWIE
DQAEIASYFEKEPVEGIACCETVKAFFDKAATLGVDVAIGYGEETPDGTRFNTASYVSDR
KTVGKYRKVHLPGTFEPFSKDPSVTNQLEKYYFKPGDYGFKAFRAPSLKKACGGEKSPIV
GQLICNDRRWAEGWRVYGLQGVEIMCIGYNTTAWAPQLWGIDPDSMTREEAYADAMFHHK
LVCQTNAYTNSTFLITSARCGKDDGIYPLISGSMIVDPEGHIVAENKTEEDELVVADIDL
DACQQGKTKTFAFAKHRRVEHYGLICERAGVVEPEEPEEA