Protein Info for mRNA_3517 in Rhodosporidium toruloides IFO0880

Name: 11885
Annotation: K06677 YCS4, CNAP1, CAPD2 condensin complex subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1380 transmembrane" amino acids 1042 to 1056 (15 residues), see Phobius details amino acids 1070 to 1093 (24 residues), see Phobius details amino acids 1104 to 1123 (20 residues), see Phobius details PF12922: Cnd1_N" amino acids 104 to 273 (170 residues), 149.7 bits, see alignment E=1.1e-47 PF12717: Cnd1" amino acids 1103 to 1263 (161 residues), 169 bits, see alignment E=1.4e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1380 amino acids)

>mRNA_3517 K06677 YCS4, CNAP1, CAPD2 condensin complex subunit 1 (Rhodosporidium toruloides IFO0880)
MRTRTNATRSGSASDHTAQLAQRGRERATMDWQLSNYITQLNDDPNFTLSHNPVDVAQLD
QHELHNALNNLVDTLTTEPAAVADPDTFDQLASFLQHADALSGQALSKLLDAITSSFSSL
LDSLRAVDSPTDHSSYRSFKDPLEIYAFFVMWCVRVGEKVGAKAGEGETGRGKKSAASKS
KSKSKSSAKDASFSWPSQIPDILGVMVKALRTIKTERIWVTTAERDEVVASCFLRPLNVL
CEHESYLKQPEIKAGIFRILCLAAKNHGQAFNVQMTIMQSLQYTEHLAEPMAELVTVYAK
EFDSEGLGEKVLGEIADRQFSAQDTKGPRSFSRFLIRLAETSPRTVLKQIVLLQKHLDSE
SYPMRNAILEVLGLLIRELALTEPGALSLDPAKHTRLLSSFFDLLTERLMDLNSYVRAKT
ASVLLKTCDLPPSRFPAQRLEIARLAARSLYDKASTVRKNCLALLVKLVVTHPYGLHGGE
LGREMWEERLAKLESELKVLDLPDEAEREARKLMEDVPEEGEEGEGENAVKEEEEEQEED
DDDESDAEGTPKKRKPLKGKGKARASAPRRSELDLAAADQSAVLSQVDSATLQRLRLTKA
YYSDALSFIETLEGALDTVTELLASSVKGEVLEAIEFCKTCKEYKVEAAEQGVRRMLHLI
WSKDEAGTAGAAATGAANQGGGEGDEDAVKEAKGIRSRLIECYSQLYFEPPQDVSEKDQV
AFVARNVIELTRDATLAELTSLEQLLAVMMAKGVVDDQVITKLWQVYSTSKDIPKFQRRG
AIIVLGMFAQTKPEVVADHVDTLLKIGLGPHGKQDLVLAKYTCIALGRVGGSVKKVKGSL
NDAQVRLPMDSPVFARLAEAIQTPSSLKEWFSMAEQAVNTIYNLGDQPDALCSEVLRQMT
VRVFGPRASPKNKGKAKEQDGEDVDGDAEMAEDEAKEAGEDAAPDAMDEDDGAAGPQDPL
TGNAFDLSQLVFVAGHCAIKQLVHLELVERDLKRRKAEEDKAKGDKKAADDELDQVAGSV
EDEIGDVIAAAKEKELLYGPESLLAVFGPMAATIVAQPKIYKNSMLQTAATLALSKFMCV
SSEFCAAHLMLLFKVLETSKEPAVRSNIVIALGDIAVCFSTIMDENSDRLYAGLHDKDPT
VKKNTLMVLTHLILNGMIKVKGQLGEMAKCLSDDDKRIKDLAHLFFEELATKDKAIYNNL
PDIISHLSTGANPVSEDTFQTSMRFIFKFVDKKEAESVVEKLCQRFQATTEPRQWRDIAF
CLSLLPFNSDLAVKKLTEGLPFYQDKLHEETVFKRFGEILAKIRAPTNKLNKTESDLKEF
EDALEAHRAKGAEDQDLTKKVAKSRRRGAAAPKAAAAAPARRAARRAKARSETPPSSPER