Protein Info for mRNA_3518 in Rhodosporidium toruloides IFO0880

Name: 11886
Annotation: K12275 SEC62 translocation protein SEC62

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 129 to 149 (21 residues), see Phobius details amino acids 155 to 182 (28 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details TIGR00869: protein translocation protein, Sec62 family" amino acids 24 to 240 (217 residues), 211.2 bits, see alignment E=1e-66 PF03839: Sec62" amino acids 101 to 228 (128 residues), 158.5 bits, see alignment E=9e-51

Best Hits

KEGG orthology group: K12275, translocation protein SEC62 (inferred from 47% identity to scm:SCHCODRAFT_70673)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>mRNA_3518 K12275 SEC62 translocation protein SEC62 (Rhodosporidium toruloides IFO0880)
MSSQNMKDNHNNAPPELKRVVDFLRNKSGIKVRTGALGGKRVDYFKGKSAVKALLSPQYA
KLASVPKVDSTESATALLHSLIPHTFFLRIARGPSISSGVKAVQIVPQQLFSPEEYYVWL
VDPNPVRQLLLAVGMVAVVLAGVMFPLWPVKMRIGVWYLSVAVLGLIAAFFGLAIVRLVV
WLVTKVVARPGIWIFPNLFADVGFVDSFIPAWGWDVPPPKKSRSKKSSSSPTSPEKSHKK
KRRAKGTHADAEELVEEATEGAAHEEGGARIEEILDEEEE