Protein Info for mRNA_3527 in Rhodosporidium toruloides IFO0880

Name: 11895
Annotation: K08658 RCE1, FACE2 prenyl protein peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 187 to 210 (24 residues), see Phobius details amino acids 230 to 253 (24 residues), see Phobius details amino acids 263 to 284 (22 residues), see Phobius details amino acids 292 to 309 (18 residues), see Phobius details PF02517: CPBP" amino acids 166 to 275 (110 residues), 63.3 bits, see alignment E=1.1e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>mRNA_3527 K08658 RCE1, FACE2 prenyl protein peptidase (Rhodosporidium toruloides IFO0880)
MLSGWATLACSAAVSTSYVGSIYLLPSTRTRHTPTSSPHPDLTEDIATAAPTNPPRDRNH
PAVIKARLLAVTLASLSSCAAVPSILAHSQPTLFPTYSSAIPRALSLLGLALPSTPANLA
RLVLYPLGLTASLFLGSLYVAYLEGELPGQRGARTWVDWKRKFEGWKGVRNYIGAPLTEE
LTFRSCILAISSLGGWSIPKLIFLSPLWFGLAHVHHARETYIAHGRTSRALLVATAQSLF
QLAYTTLFGWYASFLFLRTGSIIPPFLAHAFCNAMGVPPVGWALKVWPEKKAAILLSYAL
GITSFIYHFNRCWTDPSLFGVGLGAALGKAGRWGWP