Protein Info for mRNA_3530 in Rhodosporidium toruloides IFO0880

Name: 11898
Annotation: K14007 SEC24 protein transport protein SEC24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 transmembrane" amino acids 581 to 597 (17 residues), see Phobius details PF04810: zf-Sec23_Sec24" amino acids 115 to 150 (36 residues), 58.1 bits, see alignment (E = 1.8e-19) PF04811: Sec23_trunk" amino acids 188 to 425 (238 residues), 244.9 bits, see alignment E=2.3e-76 PF08033: Sec23_BS" amino acids 433 to 515 (83 residues), 64.3 bits, see alignment E=3.7e-21 PF04815: Sec23_helical" amino acids 526 to 628 (103 residues), 81.4 bits, see alignment E=9.7e-27 PF00626: Gelsolin" amino acids 655 to 726 (72 residues), 39.1 bits, see alignment E=1.4e-13

Best Hits

Swiss-Prot: 67% identical to SEC24_CRYNJ: Protein transport protein SEC24 (SEC24) from Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)

KEGG orthology group: K14007, protein transport protein SEC24 (inferred from 69% identity to lbc:LACBIDRAFT_387314)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (809 amino acids)

>mRNA_3530 K14007 SEC24 protein transport protein SEC24 (Rhodosporidium toruloides IFO0880)
MTKQFGAMGMGAGPVGGPRPTADVQNVNLVNMPLNPLELMTLTPPEINLPPNASFSQSPT
RNADPSYQRSTLNAIPTTQTLLNKSKIPLALVLTPYRSLKPGDPEVPVVSDTVIARCRRC
RTYINPYVTFIEGGQRWKCCMCGLSNEVPQLFDWDQEKNQPADRYARHELNSSVVEFVAP
TEYMVRAPQAPIYVFVLDVSYSAVSSGMVATAARTLLESLDRLPNEDSRTKISIICVDSC
LHFFTFEQGLTEPSMLVVGDLDDVFLPKPSDILVNLVEAKAGIENLLTRLNDMFVDTHNT
GNALGAGLQAAYKLISHVGGKVVALSATLPNIGPGALKNREDSKVLGTSKESTLLQAQTS
WYKTFAIECSRSQVSVDMWLFSSAYTDVATLSGLPRYTGGQTYFYPSFNAARSEDALKFA
HEFGTVIADPICLEAVMRVRASRGIRMSAFHGNFFVRSTDLLSLPAVPMDQSYAIEIQIE
DPISAPFVVFQTAVLHTTSFGERRIRVVTLALPTTSSISELYASVDQVALATLMANKAVE
RSSTSKLEDARDAVQHKMIEILGTYKATMTSSGSGASPQLVISYNMKFLPLLMLGLLKNT
GLRHSTMIPSDVRAYSQALLTTLPSQLLIPYLHPVFYSLHNMPKECGTISDQGVILPHPL
PLTSERLERHGLFLIEDGQNIFLWVGRDAVNQLIIDVFDLPSYADLRSGKGTLPVLDNPF
SQRVNAIIGKVREARRGPYYPHLYIVKEDGDPALRQWALSCLVEDRLETLPSYQQWVGKL
KDAVRLTLSAHRDADELTLSRPQVNDKSF