Protein Info for mRNA_3548 in Rhodosporidium toruloides IFO0880

Name: 11916
Annotation: K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 PF10354: DUF2431" amino acids 104 to 388 (285 residues), 148.4 bits, see alignment E=1.2e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (479 amino acids)

>mRNA_3548 K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase (Rhodosporidium toruloides IFO0880)
MAKGPKSKGKLAQALAKQQHAASQRQQEVRARQAEEDRAKAVKAKMAAGGRGANSTKKRR
VSEEGAGIRVGGDEAEGDAKGKETAQEKRRRTGVQPFRRGERILLVGEGNFSFSHSLLLP
HSTAAASSSSSLPPPQPLVTPSLLLCTSYDSLPLASSKYPDLETHVSALREAGATVLFGI
DATRLEDHKEVREFCGMGAKGKGKEREEEGKGGFDKIVFNFPHVGQGITDQTRNIRANQT
LLLDFYRSASLLLRSGSARAPGLSKSNQRALDTSDGTGAVEDGFDEDEQEELRMILESAS
ATAGEEVTPILPIPPPPTTRGTILLTLRTNAPYSSWLPAQLATKGPLLAPSILPSHTPKT
RLADQPTYRTVRSWEFDPDEWEGYEHRRTRGWEEGKSAGANEDLRLTAKERLERKKGAGE
AEGREKEGKGQMRTWEFEVVTREDRRREAEKGARGKKGKGAAGVGGKKRKAGGDPDLSE