Protein Info for mRNA_3587 in Rhodosporidium toruloides IFO0880

Name: 11955
Annotation: K12836 U2AF1 splicing factor U2AF 35 kDa subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 PF00642: zf-CCCH" amino acids 20 to 43 (24 residues), 28.8 bits, see alignment (E = 4.5e-11) amino acids 169 to 193 (25 residues), 21.9 bits, see alignment (E = 6.5e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (233 amino acids)

>mRNA_3587 K12836 U2AF1 splicing factor U2AF 35 kDa subunit (Rhodosporidium toruloides IFO0880)
MAHYGGGASHLAAIYGSEQDKVNCSFYLKIGACRHGERCSRKHIKPQYSQTIVILNMYQN
PAHIQGSTSNPHLRPKDAPPLDPNPKSNLSEEETQQFFDKFYEDVYCELVKYGNMLEMHV
CDNVGDHLIGNVYARFDWEDEAQRAVDELNKRWYAGRPLYAELSPVTDFREACCRQNDLG
QCDRGGFCNFMHLRHPSRPLLRELQREQRKERQVNPDPRDEERRKEMEMFGFA