Protein Info for mRNA_3588 in Rhodosporidium toruloides IFO0880

Name: 11956
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 46 to 73 (28 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 170 to 192 (23 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 276 to 294 (19 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details amino acids 382 to 401 (20 residues), see Phobius details amino acids 409 to 430 (22 residues), see Phobius details amino acids 437 to 465 (29 residues), see Phobius details amino acids 532 to 551 (20 residues), see Phobius details PF06609: TRI12" amino acids 25 to 538 (514 residues), 61.9 bits, see alignment E=6.5e-21 PF07690: MFS_1" amino acids 51 to 457 (407 residues), 50.6 bits, see alignment E=2.2e-17 PF00083: Sugar_tr" amino acids 86 to 221 (136 residues), 36 bits, see alignment E=5.8e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>mRNA_3588 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSKAHIQHFEHQMPTTEAHEEIGRLAVANAAQQDPDGQTSISPRAWVVIALCALALLQNT
FFSIAPAVCAYAIATPLGATAGERIWIVNGPGIPSVIAGPIMGIFSDIYGRRYVVIFAFL
IYCIASIVAMTASGINGVIAGQVLGGIGYGVPGLIYAIPSEIVPTVYRAWVQTGLNFSAS
VGGIVALMGMGAATKADLTNGWRWVFRTLLIMDGLLLLGFTAFYHPPPRTETRATWLEKV
KSLDWIGYFLLVAGLAPLLMGFSWSADPDKGWHDPHSYACVAVGFAGLLACLLWEWKGTS
RGFLDHRLFEQGRNFPLACFVIAVEGALFFLTNNIYSAEVNGLWSTPGTLAANAHLLPFY
CALFVIAPVMAWYVTKHKDVKWPLCAAFLCFSAAIIGFAMSGTNGKMALGFNAVAGVGFS
VILILVTCVVQLSTPPLLIAASTSLTIVIRTIGGNVGYAIAAAIYGSLSNTQIPENILKA
VIPLGFNPQYLGQLIGFLMSGQGLEAIPGVSGPILGAASAALKETEAHAYKITWFSFLPG
AIIAAIGCALLKNPKERMNWLVDAPLEVKPAGRGEEAGVDTDSVLQEKM