Protein Info for mRNA_3595 in Rhodosporidium toruloides IFO0880

Name: 11963
Annotation: K09838 ZEP, ABA1 zeaxanthin epoxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 signal peptide" amino acids 12 to 15 (4 residues), see Phobius details transmembrane" amino acids 16 to 31 (16 residues), see Phobius details PF01266: DAO" amino acids 14 to 43 (30 residues), 28.5 bits, see alignment (E = 3.6e-10) PF00890: FAD_binding_2" amino acids 14 to 42 (29 residues), 23.2 bits, see alignment (E = 1.1e-08) PF01494: FAD_binding_3" amino acids 154 to 364 (211 residues), 59.1 bits, see alignment E=1.4e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>mRNA_3595 K09838 ZEP, ABA1 zeaxanthin epoxidase (Rhodosporidium toruloides IFO0880)
MPDASFAPNTRKLDVVVIGAGIAGLAAATALRHHNVTVLEQSRLKEEIGAAIHLAPNASK
IALKWGLDLDKLGSPEANWYHELGADGNTHFKIPIFAKKEFGAPWLLNHRVDLHNELKRL
ATTEEGPISPATIRTAAKVIRVDCEEGVVELQDGEVIKADVIVAADGIHSVARTAVLGNQ
LVAKRSGHSAYRALIPADIVTSNPRIAHIVAGDAQGTGLTTYMGPDRRLVAYPCRRSQYL
NIVAIVPDSEAEGSTEQWQVPGRPEQLLESFSAFCDDAKNILRNVSSCALWQLREQDPLE
TWTKGKVILIGDAAHAMLPHQGQGGGQAIEDAEALGVFLPSSTSPSSVPELLKRAEKVRY
ERASLIQGFSRAKALGPREGEKVVNAQEHAQYNFGYNGAKEWAEKMGVEVPV