Protein Info for mRNA_3613 in Rhodosporidium toruloides IFO0880

Name: 11981
Annotation: K09518 DNAJB12 DnaJ homolog subfamily B member 12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 transmembrane" amino acids 297 to 317 (21 residues), see Phobius details PF00226: DnaJ" amino acids 128 to 188 (61 residues), 81.7 bits, see alignment E=3.4e-27 PF09320: DUF1977" amino acids 325 to 489 (165 residues), 63.9 bits, see alignment E=1.6e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (498 amino acids)

>mRNA_3613 K09518 DNAJB12 DnaJ homolog subfamily B member 12 (Rhodosporidium toruloides IFO0880)
MVANRDEAQRALAIARGKLETGQYDSAVRFAKKSIALEASPEAAALLAKAEQLQRGGGSA
NGNAASGSSTASTSATSAGQTSGSTSQRAGKAKAEASSAATGDGGGGEYTSAQLAMVKRV
KACRVTAYYEILELEKSCSDGQIKKAYRKLALGLHPDKNLAPGAEEAFKMVSKAFQVLSD
SNKRAIYDQTGGDPDSRGGGGGGGGGGFARGPSAAGFQGGGFGGEEISPEDLFRMFFGQG
GGGFGGSPFGGGPFGGGPFGGTSFQFYGPGGVRMGSMGGGMPRRAGGQGQQQTPTSMWLQ
VAPLLFLFAFSLLSQLPSFFGSSSPAPPNFSFDKTNHFSVPRATASGVKYYVSPDQFAQH
PLYESYLSANPSLGFSSSHQPGSAQYRRDLVDHLRRTSATAEPVAEGGGAAKEKEKKQSK
PVKLPHDMLSFERTVERSWVNRLQTYCRLELNDRNDQLERARGFLGFGTDHDRIAEILAQ
KLPHCEELSKVPGHGPVY