Protein Info for mRNA_3615 in Rhodosporidium toruloides IFO0880

Name: 11983
Annotation: KOG3223 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF06244: Ccdc124" amino acids 26 to 197 (172 residues), 93.5 bits, see alignment E=8.1e-31

Best Hits

Swiss-Prot: 44% identical to CC124_SCHPO: Coiled-coil domain-containing protein 124 homolog (SPBC29A10.12) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 53% identity to cci:CC1G_09182)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>mRNA_3615 KOG3223 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MAPKQNAKAVAGRARKEEAANAKAAKQAADNEAKEAEKWEKGAKGKSAKEDKAAAAEAAR
AKKAERERLLAEEEASLPSKPKAAPKAGAKKAAPPKAPAIPSFDAGLSDSASFSASGIDD
ALDALSLVNAKSDKASVGSQAAKIETHPERRFKAAFEAYKEEQLPILKKEHPGLRLNQYH
DKLFEAFKKSPQNPFNQAHMAHNASKEDKVAALHAQKEQIAKRLADK