Protein Info for mRNA_3622 in Rhodosporidium toruloides IFO0880

Name: 11990
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details amino acids 353 to 377 (25 residues), see Phobius details amino acids 399 to 423 (25 residues), see Phobius details amino acids 435 to 458 (24 residues), see Phobius details amino acids 470 to 488 (19 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 20 to 499 (480 residues), 425.2 bits, see alignment E=1.7e-131 PF00083: Sugar_tr" amino acids 25 to 503 (479 residues), 401.6 bits, see alignment E=7.6e-124 PF07690: MFS_1" amino acids 42 to 374 (333 residues), 88 bits, see alignment E=9.3e-29

Best Hits

KEGG orthology group: None (inferred from 72% identity to ncr:NCU10021)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (548 amino acids)

>mRNA_3622 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MASQLKGTADVNAVEAPVTFKAYLLCAFASFGGIFFGYDSGYINGVTGSPVFIKAIMGEG
HTALSSSRNSLIVSILSAGTFFGALIAGDIADRIGRRPTIIAGCFVYMAGVIIQMFAATA
LATIVVGRLIAGFGVGFVSAIIILYMSEICPRKVRGALVSGYQFCITIGLMLAAIVTNYT
SNRSDSGSYRIPIGLQFAWGIILAVGLFFLPDSPRYYVKRGDLDRARDVLVRLRGQPPTS
QYVELELAEIVANAEVEAKAIPTGSMFASWSACFSGSLWEAKSNLRRTILGTSLQMMQQW
TGVNFIFYYSTPFLQSTGAIKNAFLTSMIFTIVNVGSTPISFYTVERFGRRPLLIIGAFG
MLICQFLVAIIGVTAGFNKTHIDAATGKSIANNIGAVNAQVAFIAIFIFFFASTWGPGAW
VLIGEIFPLPIRSRGVALSTASNWLWNTIIAVITPYMVGEDKGNLRSSVFFIWGGLCTCA
FVYSYFLVPETKGLTLEQVDQMFEAGVTPRKSASWRPDHTYATEMGKDNAEIRHIDSQEE
HESKKLEV