Protein Info for mRNA_3633 in Rhodosporidium toruloides IFO0880

Name: 12001
Annotation: KOG1074 Transcriptional repressor SALM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 PF00096: zf-C2H2" amino acids 605 to 629 (25 residues), 20.5 bits, see alignment (E = 2.5e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (683 amino acids)

>mRNA_3633 KOG1074 Transcriptional repressor SALM (Rhodosporidium toruloides IFO0880)
MLHTATRGATHSLNEAPFPNSTSSPAQRPRHGFAAPRPASTPMVPPSDRVSPTLQRFHSS
SGPSPAALDLSTASSSHPLSSSPAPAYPPNSSFSAPHSSYTFSSTSQYASGSTSSWSDLP
YPRQDEQSSGILRGGAGGRVGSSEDGVRRELSGRATYGEEIVAAIKEEEEEEEVERRQRW
AMEASLAPTAEESWAGELDRRQDDTYYEEDAYYVPNMTAHPAGDIGEEFDFAFDSPGLVA
ARHEPVYPSAGSQMAYDGYRDGEYGAGSGNAPRQGDNSPISPLPLYADDLHHHPDQRSYA
CRPDSQTAYYDSDKSASPESPFQPFFVPAGPRPVPFASASSRFGRVDPLHSTYSHSAPSV
VGHFQHVPAQSSSYDYEGMPDPAAHFAPFYASYEMRSPMSAFQSFHIASGPQSPADEFPP
PLPSSPQSLPTTASPLFPAYHAPRHGTTSPPSSRRSLLANALGPRQTRPQSLEIAQAFVK
VEDPDSPTLLASPVPLLPSSAHAPSSSSKAGKGKKRRSSSSACSVDPDWTPSSPTRAPPS
PRKVHSTRVSPITGKPVKVISPRSWPPKDQHKRIYTCDFPGCDKSFGRPSARDTHVRSHS
GVKPFMCPIPSCGRTFSVFSNLKRHMIVHPTVDFRHVTVNDLPLIHWVPDADPEASKAAG
GEGGRLEWIDEDVEEEEEAAVGE