Protein Info for mRNA_3636 in Rhodosporidium toruloides IFO0880

Name: 12004
Annotation: K03238 EIF2S2 translation initiation factor 2 subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF01873: eIF-5_eIF-2B" amino acids 242 to 350 (109 residues), 141.5 bits, see alignment E=5.7e-46

Best Hits

Predicted SEED Role

"Eukaryotic translation initiation factor 2 beta subunit" in subsystem Translation initiation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (374 amino acids)

>mRNA_3636 K03238 EIF2S2 translation initiation factor 2 subunit 2 (Rhodosporidium toruloides IFO0880)
MADIDPPVDDIFAGIKKKKKGTKKVNLDDLELDAPAPAAAKEDAPANDDGDLDFASLKKK
KKKSVRIDSDAEDEEDVKPKKGKRVDKLGNEIDDDEPATPPAESGDAAGGLDDFSDLKKR
KKKTKKTFDLDAFDKELAETEAAGGEDEDEAPQPKSILKKKATPAGSDDEDEGVDEDEPV
EGEDPFAKEDRDEDSQTSKAEAAAQAKAWLKEDRDYTYTELLGRFFSLLYQSHPSLSGGA
GKKKYTIPPPQLFREGNKRSIFANIADICKRMHRQPEHVIQFLFAELGTNGSVDGSSRLV
IKGRFQQKQIENVLRRYIVEYVTCKTCKSPDTTLTKDNRLFFLTCSSCGSTRSVAGIKTG
FQAATRAARRAARA