Protein Info for mRNA_3643 in Rhodosporidium toruloides IFO0880

Name: 12011
Annotation: HMMPfam-Protein of unknown function (DUF1765)-PF08578

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2069 transmembrane" amino acids 1282 to 1301 (20 residues), see Phobius details amino acids 1426 to 1445 (20 residues), see Phobius details PF08578: DUF1765" amino acids 1532 to 1667 (136 residues), 101.4 bits, see alignment 2.7e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2069 amino acids)

>mRNA_3643 HMMPfam-Protein of unknown function (DUF1765)-PF08578 (Rhodosporidium toruloides IFO0880)
MSSSTSFSTSPPSSPSLAFSNRDPGVKTSTDAASTGMTPSRSWTRLQPQQTFVNGRGEQR
APAAPKQFVPLAPSNGTPPALGVQLQGQQAYVRREPSPGPSRDMGGGGDDKTVYLSSQFG
VRQRVAVKTSSRPPAPRASLGGSRRTSTTFSATSADGSSPAPRIQTSDLSPASVNGRNAS
SSLSPASTPPQASGRTTPTPTSLRPPGSYISTSSGATTPTTARTPSPAPSAGSRSVLDRP
RPRTPEAFGDDTISSTFASRHAGNVVYAPRPSRPANSASTSILDRPRPTTPDSTATLSAS
ATGAFDPPPPTKSSVLDRPRPKTPETGGLFRFGEGEQAQSAGRPRTPDATSVFRFGVAGD
GATSSTRVLDRPRPKTPDSTSVFAFQPPTAASSVGPSPQLEKPKYSILDRPRPRTPDSQA
WLDGVALRPGGLAPSGHVSASGQHRPTGSNTTTNSTFSSSKGGSFDSLGPFSATSGLSSS
GPVSAATSVRPSFESALQMDSPSRDRFSTDGAPLLKLDFDFGSAFGSTETMFGLSDFLQS
GNPSERDSVSTPAPAASTEDVRSTPSTGSFATLAPAPDRSARKESSTAAYELNDSPGQPS
EPSAGGEAEPATEERAKRPRLAGEGDTAVRSVERDVREQPSSASLQSSAQSGAFSDGSFS
TGAPSLASDTSPKPQRRRRRSLASLLSIGSVTQMGERMRGKEEKDDAMDAQPKRSFTPEP
GFSRSLAAPELSTPLGPAPPIPSLAVDKSLPPTPFAPSPAARPSPPATGTRLHSQSEETS
KRSFGSAVESANKGLNRQISRLWNRPSASPEPQGPRTPGFQVISGSTTRKVSRGKKTSLS
SLETSETHESSSRNTSFDHPSYPSAASNAVPAGLPAASASSSSKPFGRRLVERFTKSSSA
AKAGPGEGQSWSAPVRDHSEETAPPRRPGRRRSTLSSLLGVGGSSSADGHADSASAPKKL
LGMSLPAGRKSEDLLTSGRLRSTGEREMRRAWDEPPSLSGPSLSGRRSFDALRDARPVSL
ATAKLSKLAVPSAATEPPVSQSLPTTQHVPTAQPADPTPSQPAVLKAAPIQLPASAETTV
PAAAPAATAIAQPETRHPDAVSQPVANDPVTPLSAATPRPQQVHPSAPSQRKRSPPVDPP
VWRRPAPTTSRRPSHPVTHLSKAWLELEDALRVYAVLMQERKPDRGAIIGNVVLPFLQRD
EDHPVLDLSDRLAKRQRDILFEWLKTLTTELHEMQPAHRGLSLEAVAGIAESHHFSASAL
RNDTKAQVRYRSTRETVYANTLAFSGRVFALAFFRVEGVALKLLRALPTVKRQTLRRVLE
EAGVQENALPPADVDRFPPHLSDLCLRDFPTYVKLHIGQRQQLGDEDRILVRDGDVEVEM
SGNWLIRWTASDSDLPFAFYRAYHHQLAAHLVSPELRSLVRKQPSLPPSVVISAPGFLFL
AASLLDKSDALVHRNLRSVTSIGPNSGNFAVNDSANLSFGQKPKVLELAHRRVVQTMVDI
YGGATPASTTDEPRDPDAHVRRYLFAQMLPVWIRACVKRTSLWDTRSVYLVLDLAEGLIY
QLAYPSPESDEDDALAAKPDATVLDAFDLPFLFSVVRKIFLEADGTVTLMRTISFLYSHF
PLFTMRSGDRTELCERLILDEAVFQRLFLHWNSGVRGYFIRLLVWRVSRLGVVAQEQNPN
RPPDDGIVAIFNLLNVRLEALRKRHDQLEPFDSLSEDDFLFRPKRSTICSTRGVKEAPWT
VDELAEPVEEEEPESEEVMQPAPPVSAVAEADASEQGGKRQDQKAVSKVVSWLKGGMAKK
QSKGRSSLDSKIDPFALDRDDASSSSRRKRMGSSGSDVLSVSSQDVPTTVLPTTVETGAI
PDGRASPAPRMPTTPVNRAFLSPPSSPSRPGMPSRRTSSRSEKRRSHGSAFFAFEFENGV
VTRTDVDPALASSAASTKTSDTALPTSPIRPRHAGEHHPALSPRVSLRFSKRISILPPAA
LDLLREVSGVEDVPPIPARFRETVEAGYDKRLHPYAIRGLRDYEDALDEWTDWVASLQED
EELNGRLNKGFADVVPRLGVNWPLQQGED