Protein Info for mRNA_3645 in Rhodosporidium toruloides IFO0880

Name: 12013
Annotation: K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 764 PF04851: ResIII" amino acids 161 to 324 (164 residues), 34.4 bits, see alignment E=3.3e-12 PF00176: SNF2_N" amino acids 177 to 487 (311 residues), 183.1 bits, see alignment E=1e-57 PF00271: Helicase_C" amino acids 555 to 667 (113 residues), 63.8 bits, see alignment E=2.7e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (764 amino acids)

>mRNA_3645 K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 (Rhodosporidium toruloides IFO0880)
MELAGTSSSFHRTKLQLTIPSLAGCNATQATLTMKLRPFASANDFRTRTRKQKGVGNNMM
DVYLDVVTGMGEVDKVLDECEQIGRQLSSVMQIWASGAAVSAKSEQGKPGASGSNEVGMD
LVAISEETIATRVDTSNDPRVREAFKDYIRRQPAGVPESIKLKDYQMLGVNWLNLLYRRG
TSCILADEMGLGKTAQVIALLAHLKATGEPGPHLIIVPSSVLDNWMREFSIFAPDLKVAT
YYGSQAERHELRSELRKMEELDAVVTTYNIATGSPDDQKFLKRKMDFKVTVFDEGHQLKN
SESKKYKDLMQVRAQWRLLLTGTPLQNNLQELVSLLSFILPDQFRDANESLRAIFKVQPG
SQTNLLSRERILRAKKMMTPFVLRRKKAQVLTELPNKTERIEYCEMTELQRECYSEALQR
SRKALIDTGDDELEVVASEDDEEAVVDAAAAGDNEDKPKRTRKKAANTSSSAHILTDLRK
ASNHPMLFRRLYDEKKLKAMARDCLREEEFFDRNKDLIFEDMEVMTDFELHRFCQMYKHL
NKYALKDNEWMQAGKIAKLQEMLPEMKKKGDRVLIFSQFTQVLDILEVVLDTMELKYLKL
TGQTAVGERQGLVDAYNNNEDITVFLLSTRAGGLGLNLTAANTVIFYDCDYNPHNDKQAM
DRAYRLGQTRDVSVIRLITRGSLDEDMYRLATAKLKLDAEVSGQTSSITAGEKKPEEEEE
ETGGAEKKMKKSLLSGLKRQFELETQGGGATQAEGTQQEKAQDA