Protein Info for mRNA_3652 in Rhodosporidium toruloides IFO0880

Name: 12020
Annotation: K17278 PGRMC1_2 membrane-associated progesterone receptor component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 transmembrane" amino acids 24 to 42 (19 residues), see Phobius details PF00173: Cyt-b5" amino acids 81 to 142 (62 residues), 43.9 bits, see alignment E=1.1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (194 amino acids)

>mRNA_3652 K17278 PGRMC1_2 membrane-associated progesterone receptor component (Rhodosporidium toruloides IFO0880)
MDKLISYLPPGLPLLIDVLNLRQPLNAALLALLVVLTLRVLLPAPPFVPPPYALSDSPAS
GDYHWRPATHPKSEVWRKWTTKELRGFDGTNPAKEGGRILFAIRRKVYDVSSGRNFYGPG
GPYAIFAGRDASRGLAKQSFEADMLTPVDEPIDSLDDLTSSEWDNLKDWEQHFSTKYILC
GCVRQVCTTSRRSN