Protein Info for mRNA_3653 in Rhodosporidium toruloides IFO0880

Name: 12021
Annotation: KOG2437 Muskelin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1004 PF06588: Muskelin_N" amino acids 20 to 198 (179 residues), 104.5 bits, see alignment E=2.5e-33 PF13854: Kelch_5" amino acids 325 to 361 (37 residues), 23 bits, see alignment (E = 2.2e-08) PF07646: Kelch_2" amino acids 328 to 362 (35 residues), 23.3 bits, see alignment (E = 1.7e-08) PF13415: Kelch_3" amino acids 338 to 394 (57 residues), 25.6 bits, see alignment 4.2e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1004 amino acids)

>mRNA_3653 KOG2437 Muskelin (Rhodosporidium toruloides IFO0880)
MAETTAWDATRLLQTPPNPRLSYAVHSVSGYHASFHPSHILVDKPTDDSSRWTAPSPEDR
RQQARRASGVGTGPSSAGTSPTRRREPEWIIVELEQAAILRTVGFGKTTKPHPCNLADFT
LWGGLTPDPLSMEPLLEGGLKNDAMPERFEVPIEVGGKRGKAPLPVKYLKIDCHVAANAN
YSISIWHLFLEGYLPPSSPSPSSPLPPASTLVSLYTSHRSRTTNHLILAHLRRLGPRSQG
IQAFDLLYDSLDTITRDTFESPLCRELHEKLVRKGEWEEAERILDRGEEGGLFREWTPGG
GKGKTVAKWEPLSPSRSAAQTTHSWPTGRGGHAMVRVGRKILLFGGWDGSRDLGDLWEWD
LTAPDGGWRCLDSGEEMKGKDKRPGPRSCHQMVVDEAEGWVYLLGGRKDDEESEDDDDVA
MADDLDDRPRRPRRPSTSVPSAEQTPAHPGSTTSLHGSAKEDRWKSDFWRYKAVGPGRGE
WELISEDTRRDGGPALLFDHAMALHSPTSRLFVFGGKNQPFEPSVHDELSTSSDSDPTKT
RYSGLWCYDLRRKKWSHLLGDPRPPPGSTTPSSLSSDRLLSRAGHALLLDPSPRHPTLYV
YSGQRNEQYLEDLWAIRLASVDGTGERGRPGKREEGDGREDDEDWWRQGTVLDIPFPSSS
SSSLSPAAAAASRSLVDLSTLPASPESSLSRVGGGTSVSSMSRPTILQICRLWPPPPTSS
PHPTLTSTLTPPPGFTQRLVLDSHTDSWTLLTGLIRSLPPSASYGGGMAYANEMRESCLP
GVWRRTRVPGQTRSEGKGWRWQRLQEEQGAGAVSADQASDGAVPAGRFAAQIVFDPLRRE
TYLFGGHPDVRGSVDHRLNDMWRLRVLEPTPGEALRMAKFLVRKQRFNELCKTAPTVIAL
QYVQNDLSSVVNHSSPTESASFRRCMAALLSAPPSMNVDAALDGSCELPSQPAVDARAAE
VYRERHKLWEEICRFFPSEERQPEEDLEDTSRLLRVWQMTGRQC